Rw6G008790

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000410
Physical Location & Seq
Reverse (-)
14853744 .. 14855023
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008790.1

Sequence Viewer

Length: 519 bp
ATGGCTTCCACGTTTGCACAAGCCCTTTTTGCAATGCTGCTAATTGCTTCAATGGTAGCAGTTAGCACAGCCAACAACAAGGATTGGCAGCAGGGGAACTACACTGGTCGGGGTTTCAACCATGGTCCATATCACCTCAACAAGACAGAAGGACCCAACAAGATCATTGTTGGTGGCTCCGAAAATTGGCATTATGGTTTTAACTATGCAGATTGGTCTTTGAAAAATGCCTCATTTTACGTCCACGACACTCTGATTTTCAAGTATGATCCGCCAAACAATACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATACACTGCGACTTAAGCAAGGCCAAGATGGTGGGAAGTCCAACACAAGGAGGTGGAAACGGCTTTGAGTTTGTGCTCAAGAGCTCGCGGCCTTACTACTTTGCTTGTGGCGAGCACAATGGTACACATTGTAAAGACGGAATGATGAGGTTCTTCGTGTTCCCAAAGCTTCGCGGCTGGCATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

172

Amino Acids

19.46

Weight (kDa)

8.94

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 418, 504
AciI CCGC 3 cut(s) 272, 418, 504
AclWI GGATC 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 2 cut(s) 305, 454
AfiI CCNNNNNNNGG 2 cut(s) 186, 377
AflII CTTAAG 1 cut(s) 343
AgsI TTSAA 4 cut(s) 51, 118, 223, 262
AluBI AGCT 3 cut(s) 327, 414, 499
AluI AGCT 3 cut(s) 327, 414, 499
Alw21I GWGCWC 3 cut(s) 408, 416, 447
AlwI GGATC 1 cut(s) 263
AoxI GGCC 2 cut(s) 351, 419
ApeKI GCWGC 2 cut(s) 37, 88
AspS9I GGNCC 2 cut(s) 125, 152
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 125, 152
BanII GRGCYC 1 cut(s) 416
Bbv12I GWGCWC 3 cut(s) 408, 416, 447
BbvI GCAGC 2 cut(s) 24, 100
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 406
BfrI CTTAAG 1 cut(s) 343
BisI GCNGC 4 cut(s) 38, 89, 419, 505
BlsI GCNGC 4 cut(s) 39, 90, 420, 506
Bme18I GGWCC 2 cut(s) 125, 152
BmgT120I GGNCC 2 cut(s) 125, 152
BmiI GGNNCC 2 cut(s) 154, 178
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 377
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 2 cut(s) 186, 377
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 2 cut(s) 24, 100
Bsh1236I CGCG 2 cut(s) 418, 504
BshFI GGCC 2 cut(s) 353, 421
BsiHKAI GWGCWC 3 cut(s) 408, 416, 447
BslI CCNNNNNNNGG 2 cut(s) 186, 377
BsnI GGCC 2 cut(s) 353, 421
Bsp1286I GDGCHC 3 cut(s) 408, 416, 447
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 162, 268
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 3 cut(s) 272, 418, 504
BspANI GGCC 2 cut(s) 353, 421
BspFNI CGCG 2 cut(s) 418, 504
BspLI GGNNCC 2 cut(s) 154, 178
BspPI GGATC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 162, 268
BssT1I CCWWGG 1 cut(s) 121
BstAFI CTTAAG 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 416, 443, 509
BstDSI CCRYGG 1 cut(s) 121
BstFNI CGCG 2 cut(s) 418, 504
BstKTI GATC 2 cut(s) 165, 271
BstMBI GATC 2 cut(s) 162, 268
BstMWI GCNNNNNNNGC 2 cut(s) 29, 345
BstNSI RCATGY 1 cut(s) 310
BstUI CGCG 2 cut(s) 418, 504
BstV1I GCAGC 2 cut(s) 24, 100
BstXI CCANNNNNNTGG 2 cut(s) 321, 361
BsuRI GGCC 2 cut(s) 353, 421
BtgI CCRYGG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 102, 334
Cac8I GCNNGC 3 cut(s) 416, 443, 509
Cfr13I GGNCC 2 cut(s) 125, 152
Csp6I GTAC 2 cut(s) 304, 453
CviAII CATG 2 cut(s) 122, 307
CviQI GTAC 2 cut(s) 304, 453
DpnI GATC 2 cut(s) 164, 270
DpnII GATC 2 cut(s) 162, 268
DraIII CACNNNGTG 1 cut(s) 301
EciI GGCGGA 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 416
Eco47I GGWCC 2 cut(s) 125, 152
Eco53kI GAGCTC 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 125, 310
FaiI YATR 7 cut(s) 123, 130, 195, 207, 267, 308, 332
FatI CATG 2 cut(s) 121, 306
Fnu4HI GCNGC 4 cut(s) 38, 89, 419, 505
FriOI GRGCYC 1 cut(s) 416
Fsp4HI GCNGC 4 cut(s) 38, 89, 419, 505
GluI GCNGC 4 cut(s) 38, 89, 419, 505
HaeIII GGCC 2 cut(s) 353, 421
Hin1II CATG 2 cut(s) 125, 310
HindIII AAGCTT 1 cut(s) 497
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 244, 304, 455
Hpy188I TCNGA 2 cut(s) 181, 255
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 3 cut(s) 244, 304, 455
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 11, 240
HpyCH4V TGCA 3 cut(s) 17, 32, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 345
HpySE526I ACGT 2 cut(s) 11, 240
Hsp92II CATG 2 cut(s) 125, 310
Kzo9I GATC 2 cut(s) 162, 268
LmnI GCTCC 2 cut(s) 182, 324
LpnPI CCDG 3 cut(s) 77, 90, 493
Lsp1109I GCAGC 2 cut(s) 24, 100
MaeII ACGT 2 cut(s) 11, 240
MalI GATC 2 cut(s) 164, 270
MboI GATC 2 cut(s) 162, 268
MboII GAAGA 1 cut(s) 475
MhlI GDGCHC 3 cut(s) 408, 416, 447
MluCI AATT 2 cut(s) 42, 184
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 6 cut(s) 146, 241, 300, 303, 374, 471
MseI TTAA 3 cut(s) 201, 344, 517
MspCI CTTAAG 1 cut(s) 343
MvnI CGCG 2 cut(s) 418, 504
MwoI GCNNNNNNNGC 2 cut(s) 29, 345
NcoI CCATGG 1 cut(s) 121
NdeII GATC 2 cut(s) 162, 268
NlaIII CATG 2 cut(s) 125, 310
NlaIV GGNNCC 2 cut(s) 154, 178
NspI RCATGY 1 cut(s) 310
PkrI GCNGC 4 cut(s) 39, 90, 420, 506
PpuMI RGGWCCY 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 154, 178
PspPI GGNCC 2 cut(s) 125, 152
PspPPI RGGWCCY 1 cut(s) 152
RsaI GTAC 2 cut(s) 305, 454
RsaNI GTAC 2 cut(s) 304, 453
SacI GAGCTC 1 cut(s) 416
SaqAI TTAA 3 cut(s) 201, 344, 517
SatI GCNGC 4 cut(s) 38, 89, 419, 505
Sau3AI GATC 2 cut(s) 162, 268
Sau96I GGNCC 2 cut(s) 125, 152
SduI GDGCHC 3 cut(s) 408, 416, 447
SinI GGWCC 2 cut(s) 125, 152
SmlI CTYRAG 2 cut(s) 343, 407
SmoI CTYRAG 2 cut(s) 343, 407
Sse9I AATT 2 cut(s) 42, 184
SsiI CCGC 3 cut(s) 272, 418, 504
SstI GAGCTC 1 cut(s) 416
StyI CCWWGG 1 cut(s) 121
TaiI ACGT 2 cut(s) 14, 243
TasI AATT 2 cut(s) 42, 184
TatI WGTACW 1 cut(s) 303
TauI GCSGC 2 cut(s) 421, 507
Tru1I TTAA 3 cut(s) 201, 344, 517
Tru9I TTAA 3 cut(s) 201, 344, 517
TscAI CASTG 2 cut(s) 109, 341
TseI GCWGC 2 cut(s) 37, 88
TspDTI ATGAA 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 2 cut(s) 109, 341
Vha464I CTTAAG 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 125, 152
XceI RCATGY 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.