Prupe.8G116900_v2.0.a1

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000410
Physical Location & Seq
Forward (+)
14380945 .. 14382132
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G116900.1

Sequence Viewer

Length: 507 bp
ATGGGTTCCCATTATTTTGCACAAGCCCTAGCAATGGTGCTAATTGCTTCAATGCTGGCAGTCGGCTTAGCCAATAAGGATTGGCAACATGGCAACTACACTGGTTGGGGTTTCAACCGTGGCCTCAACAAGACCAAAGGACCCAACAAAATCACAGTTGGTGGGTCGGAAAACTGGCATTACGGATTTGACTACAAACAATGGGCTTGGAAGAATGGCCCATTTTACATCAATGACACTCTAGTTTTCAAGTATGATCCACCAAATGACACCACACGTCCTCATAGCGTGTACTTGTTCCAAAACCCTTGGAGCTTCATGAAGTGTGATTTAAGCCAAGCCAAGATGGTGGGAAAACCGACACAAGGAGGCGGAGAAGGCTTTGAGTTTGTGCTCAAGAGCTGGCAACCTTACTACTTCGCTTGCGGCGAGCACAACGGCCTCCATTGTAAGGACGGACTGATGAGGTTCGTCGTCTTCCCAATGTTTCGCGGCTGGAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

169

Amino Acids

19.3

Weight (kDa)

9.08

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 492
AciI CCGC 3 cut(s) 372, 426, 492
AclWI GGATC 1 cut(s) 251
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 3 cut(s) 34, 365, 451
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 3 cut(s) 51, 115, 250
AjiI CACGTC 1 cut(s) 278
AluBI AGCT 2 cut(s) 315, 402
AluI AGCT 2 cut(s) 315, 402
Alw21I GWGCWC 2 cut(s) 396, 435
AlwI GGATC 1 cut(s) 251
AoxI GGCC 3 cut(s) 121, 217, 439
AspS9I GGNCC 2 cut(s) 140, 218
AvaII GGWCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 2 cut(s) 396, 435
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 454
BfaI CTAG 2 cut(s) 29, 242
BisI GCNGC 2 cut(s) 427, 493
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 2 cut(s) 428, 494
Bme18I GGWCC 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 140, 218
BmiI GGNNCC 2 cut(s) 7, 142
BpiI GAAGAC 1 cut(s) 469
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 118, 308
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 365, 451
Bse1I ACTGG 2 cut(s) 106, 179
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 118, 308
BseLI CCNNNNNNNGG 3 cut(s) 34, 365, 451
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 106, 179
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 3 cut(s) 123, 219, 441
BsiHKAI GWGCWC 2 cut(s) 396, 435
BslI CCNNNNNNNGG 3 cut(s) 34, 365, 451
BsnI GGCC 3 cut(s) 123, 219, 441
Bsp1286I GDGCHC 2 cut(s) 396, 435
Bsp143I GATC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 3 cut(s) 372, 426, 492
BspANI GGCC 3 cut(s) 123, 219, 441
BspFNI CGCG 1 cut(s) 492
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 7, 142
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 2 cut(s) 106, 179
BssECI CCNNGG 2 cut(s) 118, 308
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 119, 157
BstC8I GCNNGC 4 cut(s) 57, 404, 424, 431
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstUI CGCG 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 349
BsuRI GGCC 3 cut(s) 123, 219, 441
BtgI CCRYGG 1 cut(s) 118
BtrI CACGTC 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 57, 404, 424, 431
CciI TCATGA 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 140, 218
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 89, 319
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 67
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EciI GGCGGA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 2 cut(s) 92, 322
FaiI YATR 4 cut(s) 90, 255, 285, 320
FatI CATG 2 cut(s) 88, 318
Fnu4HI GCNGC 2 cut(s) 427, 493
Fsp4HI GCNGC 2 cut(s) 427, 493
FspBI CTAG 2 cut(s) 29, 242
GluI GCNGC 2 cut(s) 427, 493
HaeIII GGCC 3 cut(s) 123, 219, 441
Hin1II CATG 2 cut(s) 92, 322
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 319, 397
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 119, 157
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 2 cut(s) 92, 322
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 5 cut(s) 41, 87, 160, 388, 481
MaeI CTAG 2 cut(s) 29, 242
MaeII ACGT 1 cut(s) 277
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 2 cut(s) 223, 469
MhlI GDGCHC 2 cut(s) 396, 435
MluCI AATT 2 cut(s) 42, 499
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 5 cut(s) 134, 291, 362, 452, 459
MseI TTAA 1 cut(s) 332
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 378
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 92, 322
NlaIV GGNNCC 2 cut(s) 7, 142
PagI TCATGA 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PkrI GCNGC 2 cut(s) 428, 494
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 7, 142
PspPI GGNCC 2 cut(s) 140, 218
PspPPI RGGWCCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 427, 493
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 2 cut(s) 140, 218
SduI GDGCHC 2 cut(s) 396, 435
SetI ASST 5 cut(s) 280, 317, 404, 412, 470
SinI GGWCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 2 cut(s) 42, 499
SsiI CCGC 3 cut(s) 372, 426, 492
SspMI CTAG 2 cut(s) 29, 242
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 119, 157
TaiI ACGT 1 cut(s) 280
TasI AATT 2 cut(s) 42, 499
TatI WGTACW 1 cut(s) 291
TauI GCSGC 2 cut(s) 429, 495
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 307, 335
TspGWI ACGGA 2 cut(s) 198, 471
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 140
XspI CTAG 2 cut(s) 29, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.