Rw1G013440

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000410
Physical Location & Seq
Reverse (-)
29972715 .. 29973505
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013440.1

Sequence Viewer

Length: 402 bp
ATGGCCTTGATTAGGAGTGCACAATTAGGGTTCATTCTCCTTGTAGCTACTGCTTCTCTATTAGAAGTGAGCTGGCGTTTTGGTTTCAACTACACTGATTGGGCTCTCCAAAACAGTCCATTTTACATAAATGATGAACTGGTGTTCAAGTATGATCCTCCAAGCAATACCAACTCAGGTTACAGCGTGTACTTGCTCCCCAACCTATGGAGCTACATAACTTGTGACTTCAGCAAAGCCAAGATACTGGCGAGTGAGACCCGAGGAGATGGTGAGGGCTTTAAGGTTGAACTAAATCAATGGAGGCCTTATTACTTTGCTAGTGGTAACAAAGATGGCTACAATTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACGTTGGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

133

Amino Acids

15.31

Weight (kDa)

7.68

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AclWI GGATC 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 214
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 12, 207
AgsI TTSAA 3 cut(s) 88, 148, 290
AluBI AGCT 4 cut(s) 47, 72, 213, 367
AluI AGCT 4 cut(s) 47, 72, 213, 367
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 3, 305
ApaLI GTGCAC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 22
BccI CCATC 3 cut(s) 263, 329, 347
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 207
Bse1I ACTGG 2 cut(s) 144, 252
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 12, 207
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 144, 252
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 2 cut(s) 5, 307
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 12, 207
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 2 cut(s) 5, 307
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 22, 106
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 2 cut(s) 5, 307
BspCNI CTCAG 1 cut(s) 188
BspHI TCATGA 1 cut(s) 360
BspPI GGATC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 2 cut(s) 144, 252
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuRI GGCC 2 cut(s) 5, 307
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 360
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 361
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 175
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 1 cut(s) 364
FaiI YATR 5 cut(s) 128, 153, 208, 218, 362
FatI CATG 1 cut(s) 360
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 106
FspBI CTAG 1 cut(s) 321
HaeIII GGCC 2 cut(s) 5, 307
Hin1II CATG 1 cut(s) 364
HinfI GANTC 1 cut(s) 357
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 20, 190
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 2 cut(s) 20, 190
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 20, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 1 cut(s) 364
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 201, 210
LpnPI CCDG 4 cut(s) 58, 125, 162, 233
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 179, 224, 326
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MfeI CAATTG 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 22, 106
MluCI AATT 2 cut(s) 23, 343
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 4 cut(s) 168, 257, 268, 297
MseI TTAA 1 cut(s) 282
MunI CAATTG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 345
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 224
PagI TCATGA 1 cut(s) 360
PceI AGGCCT 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 207
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 351
SduI GDGCHC 2 cut(s) 22, 106
SetI ASST 8 cut(s) 49, 74, 181, 207, 215, 288, 369, 391
Sse9I AATT 2 cut(s) 23, 343
SseBI AGGCCT 1 cut(s) 307
SspMI CTAG 1 cut(s) 321
StuI AGGCCT 1 cut(s) 307
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 391
TasI AATT 2 cut(s) 23, 343
TatI WGTACW 1 cut(s) 189
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 22, 150, 377
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 207
VneI GTGCAC 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 387
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.