Prupe.1G390400_v2.0.a1

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000410
Physical Location & Seq
Forward (+)
34827050 .. 34827740
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G390400.1

Sequence Viewer

Length: 435 bp
ATGGGTTTCAGTTATGGGTCACAAGGATTCATTTTGATTCTTGTAGCTGTCTCTCTGTTGGCACTTGGTGAGGCTAAAACTGTGGTTGTAGGAGGGTCTCAAGGTTGGCGTTATGGCTTCAACTACACTCATTGGACTCTCAAAAATGGCCCCTTTTACATAAAAGACACACTTGTTTTCAAGTACGATCCACCAAGCAACACCCGTGCTCATGACGTGTACTTACTCCCAAACCTATGGAGCTACATAACATGTGATTTCAGGAGGGCAAAGTTGGTGGCAAACGCTACACAGGGAGGCGGCGAGGGGTTTAAGTTTGTGTTGAACCAGTGGGGGCCTCACTACTTTGCTTGTGGCCGGGGTGCCAATAGCTCTCACTGCAATCAGGGGCTCATGAAGTTCTTCGCTGTGCCATGGCCCCGCTGGCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

145

Amino Acids

16.25

Weight (kDa)

9.51

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AciI CCGC 2 cut(s) 300, 421
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 355
AdeI CACNNNGTG 1 cut(s) 68
AfaI GTAC 2 cut(s) 185, 221
AflIII ACRYGT 2 cut(s) 216, 251
AgsI TTSAA 3 cut(s) 121, 181, 325
AjiI CACGTC 1 cut(s) 217
AluBI AGCT 3 cut(s) 47, 243, 372
AluI AGCT 3 cut(s) 47, 243, 372
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 2 cut(s) 55, 102
AlwI GGATC 1 cut(s) 182
AoxI GGCC 4 cut(s) 148, 335, 355, 416
Asp700I GAANNNNTTC 1 cut(s) 401
AspS9I GGNCC 3 cut(s) 149, 335, 417
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 80
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 55, 102
BglI GCCNNNNNGGC 1 cut(s) 424
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 149, 335, 417
BmiI GGNNCC 4 cut(s) 151, 336, 364, 419
BmrFI CCNGG 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 358, 413
Bse1I ACTGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 358, 413
BseNI ACTGG 1 cut(s) 328
BshFI GGCC 4 cut(s) 150, 337, 357, 418
BshNI GGYRCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 55, 102
BsnI GGCC 4 cut(s) 150, 337, 357, 418
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 211, 393
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 413
BspACI CCGC 2 cut(s) 300, 421
BspANI GGCC 4 cut(s) 150, 337, 357, 418
BspHI TCATGA 2 cut(s) 211, 393
BspLI GGNNCC 4 cut(s) 151, 336, 364, 419
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 358, 413
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 425
BstDSI CCRYGG 1 cut(s) 413
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 55, 102
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 378, 424
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 357
BstXI CCANNNNNNTGG 1 cut(s) 237
BsuRI GGCC 4 cut(s) 150, 337, 357, 418
BtgI CCRYGG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 335, 376
Cac8I GCNNGC 1 cut(s) 425
CciI TCATGA 2 cut(s) 211, 393
Cfr13I GGNCC 3 cut(s) 149, 335, 417
Csp6I GTAC 2 cut(s) 184, 220
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 4 cut(s) 212, 252, 394, 414
CviQI GTAC 2 cut(s) 184, 220
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 4 cut(s) 215, 255, 397, 417
FaiI YATR 9 cut(s) 15, 114, 161, 213, 238, 248, 253, 395, 415
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 4 cut(s) 211, 251, 393, 413
FauI CCCGC 1 cut(s) 428
Fnu4HI GCNGC 1 cut(s) 301
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 4 cut(s) 150, 337, 357, 418
HapII CCGG 1 cut(s) 358
Hin1II CATG 4 cut(s) 215, 255, 397, 417
HinfI GANTC 3 cut(s) 27, 37, 136
HpaII CCGG 1 cut(s) 358
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 212, 262, 394
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 424
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 4 cut(s) 215, 255, 397, 417
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 247, 278, 341, 371, 371, 409
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 18
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 211, 393
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 6 cut(s) 64, 86, 258, 290, 298, 348
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 378, 424
NciI CCSGG 1 cut(s) 359
NcoI CCATGG 1 cut(s) 413
NdeII GATC 1 cut(s) 187
NlaIII CATG 4 cut(s) 215, 255, 397, 417
NlaIV GGNNCC 4 cut(s) 151, 336, 364, 419
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 1 cut(s) 255
PagI TCATGA 2 cut(s) 211, 393
PciI ACATGT 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 27, 37
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 251
PspN4I GGNNCC 4 cut(s) 151, 336, 364, 419
PspPI GGNCC 3 cut(s) 149, 335, 417
RsaI GTAC 2 cut(s) 185, 221
RsaNI GTAC 2 cut(s) 184, 220
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 3 cut(s) 149, 335, 417
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 2 cut(s) 211, 393
SetI ASST 6 cut(s) 49, 106, 219, 237, 245, 374
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SsiI CCGC 2 cut(s) 300, 421
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 219
TatI WGTACW 1 cut(s) 219
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 2 cut(s) 27, 37
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 335, 383
TseFI GTSAC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 19, 410
TspRI CASTG 2 cut(s) 335, 383
XceI RCATGY 1 cut(s) 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.