Rh1CG150000

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000410
Physical Location & Seq
Forward (+)
33036995 .. 33038092
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG150000.1

Sequence Viewer

Length: 315 bp
ATGGCCTTGATTAGGAGTGCACAATTAGGGTTCATTCTCCTTGTAGCTACTGCTTCTCTATTAGAAGTGAGCGAGGCCAAAACTATTGTCGTCGGCGGTTCTGAAGGCTGGCGTTTTGGTTTCAACTACACTGATTGGGCTCTCCAAAACAGTCCATTTTACATAAATGATGAACTGGTGTTCAAGTATGATCCTCCAAGCAAGACCAACTCAGGTTACAGCGTGTACTTGCTCCCCAACCTGTGGAGCTACATAACTTGTGACTTCAGCAAAGCCAAGATACTGGCGAGTGAGACCCGAGGAGATGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

104

Amino Acids

11.57

Weight (kDa)

5.24

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 123, 250
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 12, 243
AgsI TTSAA 2 cut(s) 124, 184
AluBI AGCT 2 cut(s) 47, 249
AluI AGCT 2 cut(s) 47, 249
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 287
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 2 cut(s) 3, 75
ApaLI GTGCAC 1 cut(s) 18
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AvaI CYCGRG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 22
BccI CCATC 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 243
Bse1I ACTGG 2 cut(s) 180, 288
BseDI CCNNGG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 12, 243
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 180, 288
BseRI GAGGAG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 2 cut(s) 5, 77
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 12, 243
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 2 cut(s) 5, 77
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 22, 142
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 5, 77
BspCNI CTCAG 1 cut(s) 224
BspPI GGATC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 287
BsrI ACTGG 2 cut(s) 180, 288
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 211
BstENI CCTNNNNNAGG 1 cut(s) 10
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 283
BsuRI GGCC 2 cut(s) 5, 77
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 226
CviJI RGCY 7 cut(s) 5, 47, 77, 108, 140, 249, 275
CviKI_1 RGCY 7 cut(s) 5, 47, 77, 108, 140, 249, 275
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 123, 250
Eco88I CYCGRG 1 cut(s) 297
EcoNI CCTNNNNNAGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 142
FaiI YATR 3 cut(s) 164, 189, 254
FriOI GRGCYC 1 cut(s) 142
HaeIII GGCC 2 cut(s) 5, 77
Hpy166II GTNNAC 2 cut(s) 20, 226
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 20, 226
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 211
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 237, 246
LpnPI CCDG 5 cut(s) 94, 161, 198, 254, 269
MaeIII GTNAC 2 cut(s) 215, 260
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 22, 142
MluCI AATT 1 cut(s) 23
MnlI CCTC 3 cut(s) 67, 204, 293
NdeII GATC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 243
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 190
SduI GDGCHC 2 cut(s) 22, 142
SetI ASST 4 cut(s) 49, 217, 243, 251
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 96
TaaI ACNGT 1 cut(s) 152
TasI AATT 1 cut(s) 23
TatI WGTACW 1 cut(s) 225
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 22, 186
TspRI CASTG 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 243
VneI GTGCAC 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.