Rmu_co8497247.1_g000001

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8497247.1
OG0000410
Physical Location & Seq
Forward (+)
1 .. 2402
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8497247.1_g000001.1.cds

Sequence Viewer

Length: 545 bp
cagtgttgcatttgatagaggggattaatatgagatccaattttgcacaagcactttctgcagtgttgctaattgcttcaatggtggcaattagcacagccaacaaggattggcagcatgggaactacactggctggggttttaaccatggtccataccaccttaacaagacaaacggacctagcaagattgttgtcggtggctccgaaaactggcattatggttttaactatgcagattggtctttgaaaaatggcccattttacgtccaggatactctagttttcaagtataatccaccaaacaacaccacacctcctcacagcgtgtacatgctaccaaacctttggagcttcataaactgcgacttaagccaggccaggatggtgggaagtccaacacaaggaggcggagacggcgttcagtttgtgctcaagagctggcagccttactacttcgcttgtggcgagcacaatggtacacattgtaaagacggaatgatgaggttcttcgtgttcccaaagcttcgcggctggcattactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

180

Amino Acids

20.34

Weight (kDa)

8.76

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 530
AciI CCGC 2 cut(s) 410, 530
AclWI GGATC 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 327
AfaI GTAC 2 cut(s) 331, 480
AfiI CCNNNNNNNGG 2 cut(s) 212, 403
AflII CTTAAG 1 cut(s) 369
AgsI TTSAA 3 cut(s) 80, 249, 288
AjnI CCWGG 3 cut(s) 269, 374, 379
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 3 cut(s) 353, 440, 525
AluI AGCT 3 cut(s) 353, 440, 525
Alw21I GWGCWC 2 cut(s) 434, 473
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 1 cut(s) 29
AoxI GGCC 2 cut(s) 255, 377
ApeKI GCWGC 2 cut(s) 114, 444
AseI ATTAAT 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 151, 178, 256
AvaII GGWCC 2 cut(s) 151, 178
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
Bbv12I GWGCWC 2 cut(s) 434, 473
BbvI GCAGC 2 cut(s) 126, 456
BccI CCATC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 3 cut(s) 271, 376, 381
BciVI GTATCC 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 407
BfaI CTAG 2 cut(s) 182, 280
BfmI CTRYAG 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 369
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 3 cut(s) 115, 445, 531
BlsI GCNGC 3 cut(s) 116, 446, 532
Bme1390I CCNGG 3 cut(s) 271, 376, 381
Bme18I GGWCC 2 cut(s) 151, 178
BmgT120I GGNCC 3 cut(s) 151, 178, 256
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 3 cut(s) 271, 376, 381
BpuEI CTTGAG 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 4 cut(s) 300, 330, 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 403
Bse1I ACTGG 2 cut(s) 135, 217
BseBI CCWGG 3 cut(s) 271, 376, 381
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 2 cut(s) 212, 403
BseNI ACTGG 2 cut(s) 135, 217
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 126, 456
BseYI CCCAGC 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 2 cut(s) 257, 379
BsiHKAI GWGCWC 2 cut(s) 434, 473
BslI CCNNNNNNNGG 2 cut(s) 212, 403
BsmAI GTCTC 1 cut(s) 407
BsmBI CGTCTC 1 cut(s) 407
BsnI GGCC 2 cut(s) 257, 379
Bsp1286I GDGCHC 2 cut(s) 434, 473
Bsp1407I TGTACA 1 cut(s) 329
Bsp143I GATC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 410, 530
BspANI GGCC 2 cut(s) 257, 379
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 369
BsrGI TGTACA 1 cut(s) 329
BsrI ACTGG 2 cut(s) 135, 217
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 3 cut(s) 271, 376, 381
BstAFI CTTAAG 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 58
BstAUI TGTACA 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 442, 469, 535
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 389
BstFNI CGCG 1 cut(s) 530
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 58, 371, 416
BstNI CCWGG 3 cut(s) 271, 376, 381
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 3 cut(s) 269, 374, 379
BstSFI CTRYAG 1 cut(s) 59
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 126, 456
BstX2I RGATCY 1 cut(s) 34
BstXI CCANNNNNNTGG 2 cut(s) 347, 387
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 257, 379
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 3 cut(s) 8, 68, 128
Cac8I GCNNGC 3 cut(s) 442, 469, 535
Cfr13I GGNCC 3 cut(s) 151, 178, 256
Csp6I GTAC 2 cut(s) 330, 479
CviAII CATG 3 cut(s) 118, 148, 333
CviQI GTAC 2 cut(s) 330, 479
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 327
EciI GGCGGA 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 151, 178
EcoRII CCWGG 3 cut(s) 269, 374, 379
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 3 cut(s) 121, 151, 336
FaiI YATR 9 cut(s) 31, 119, 149, 156, 221, 233, 293, 334, 358
FatI CATG 3 cut(s) 117, 147, 332
Fnu4HI GCNGC 3 cut(s) 115, 445, 531
FokI GGATG 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 115, 445, 531
FspBI CTAG 2 cut(s) 182, 280
GluI GCNGC 3 cut(s) 115, 445, 531
GsaI CCCAGC 1 cut(s) 138
HaeIII GGCC 2 cut(s) 257, 379
Hin1II CATG 3 cut(s) 121, 151, 336
HindIII AAGCTT 1 cut(s) 523
Hpy166II GTNNAC 2 cut(s) 330, 481
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 435
Hpy8I GTNNAC 2 cut(s) 330, 481
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 9, 46, 61, 235
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 371, 416
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 3 cut(s) 121, 151, 336
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 208, 350
Lsp1109I GCAGC 2 cut(s) 126, 456
MaeI CTAG 2 cut(s) 182, 280
MaeII ACGT 1 cut(s) 266
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 501
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 434, 473
MluCI AATT 3 cut(s) 39, 71, 89
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 5 cut(s) 12, 326, 329, 400, 497
MseI TTAA 5 cut(s) 26, 143, 164, 227, 370
MspCI CTTAAG 1 cut(s) 369
MspR9I CCNGG 3 cut(s) 271, 376, 381
MvaI CCWGG 3 cut(s) 271, 376, 381
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 3 cut(s) 58, 371, 416
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 121, 151, 336
NlaIV GGNNCC 1 cut(s) 204
NspI RCATGY 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 203, 464
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 3 cut(s) 116, 446, 532
PshBI ATTAAT 1 cut(s) 26
Psp6I CCWGG 3 cut(s) 269, 374, 379
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 3 cut(s) 269, 374, 379
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 3 cut(s) 151, 178, 256
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 331, 480
RsaNI GTAC 2 cut(s) 330, 479
SaqAI TTAA 5 cut(s) 26, 143, 164, 227, 370
SatI GCNGC 3 cut(s) 115, 445, 531
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 3 cut(s) 151, 178, 256
ScrFI CCNGG 3 cut(s) 271, 376, 381
SduI GDGCHC 2 cut(s) 434, 473
SetI ASST 9 cut(s) 164, 183, 269, 318, 347, 355, 442, 508, 527
SfcI CTRYAG 1 cut(s) 59
SinI GGWCC 2 cut(s) 151, 178
SmlI CTYRAG 2 cut(s) 369, 433
SmoI CTYRAG 2 cut(s) 369, 433
Sse9I AATT 3 cut(s) 39, 71, 89
SsiI CCGC 2 cut(s) 410, 530
SspMI CTAG 2 cut(s) 182, 280
StyD4I CCNGG 3 cut(s) 269, 374, 379
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 269
TasI AATT 3 cut(s) 39, 71, 89
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 533
Tru1I TTAA 5 cut(s) 26, 143, 164, 227, 370
Tru9I TTAA 5 cut(s) 26, 143, 164, 227, 370
TscAI CASTG 2 cut(s) 68, 135
TseI GCWGC 2 cut(s) 114, 444
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 2 cut(s) 191, 509
TspRI CASTG 2 cut(s) 68, 135
Vha464I CTTAAG 1 cut(s) 369
VpaK11BI GGWCC 2 cut(s) 151, 178
VspI ATTAAT 1 cut(s) 26
XceI RCATGY 1 cut(s) 336
XspI CTAG 2 cut(s) 182, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.