Rh6AG101000

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000410
Physical Location & Seq
Reverse (-)
15028553 .. 15029266
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG101000.1

Sequence Viewer

Length: 483 bp
ATGCTGCTAATTGCTTCAATGGTGGCATTTTGCACTGCCAACAAGGATTGGAAGCACGGGAACTACACCGGTTGGGGTTCTAACCATGGTCCATATCACCTTAACACGACAAACGGACCCAACACTAAGATCGTTGTGGGTGGTTCGGACTGGCATTATGGTTTTAACTACGCAGATTGGTCTTTGAAAAATAACTCATTTTACGTCCAGGACACTCTAGTTTTCAAGTATGATCCACCAAACGACACCACACGTCCTCATAGCGTGTACTTGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTTAGCCAGGCCAGGATGATGGGAAGTCCAACACAAGGAGGCGGAGACGGGTTTCAGTTCGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGTGAGCACGATGGTGCTCATTGTAAGGACGGAATGATGAGGTTCTTTGTCTTCCCCAAGCTCCGCGGCTGGCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

160

Amino Acids

18.34

Weight (kDa)

7.73

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 468
AciI CCGC 3 cut(s) 348, 466, 468
AclWI GGATC 1 cut(s) 227
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 251
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 3 cut(s) 18, 187, 226
AjiI CACGTC 1 cut(s) 254
AjnI CCWGG 3 cut(s) 207, 312, 317
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 3 cut(s) 291, 378, 463
AluI AGCT 3 cut(s) 291, 378, 463
Alw21I GWGCWC 3 cut(s) 372, 411, 421
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 4, 382
AsiGI ACCGGT 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 89, 116
AsuHPI GGTGA 2 cut(s) 89, 416
AvaII GGWCC 2 cut(s) 89, 116
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 3 cut(s) 372, 411, 421
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 319, 407
BciT130I CCWGG 3 cut(s) 209, 314, 319
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 218
BisI GCNGC 3 cut(s) 5, 383, 469
BlsI GCNGC 3 cut(s) 6, 384, 470
Bme1390I CCNGG 3 cut(s) 209, 314, 319
Bme18I GGWCC 2 cut(s) 89, 116
BmgBI CACGTC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 89, 116
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 3 cut(s) 209, 314, 319
BpiI GAAGAC 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 85, 466
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 3 cut(s) 209, 314, 319
BseDI CCNNGG 2 cut(s) 85, 466
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 317
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 3 cut(s) 372, 411, 421
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 345
BsmBI CGTCTC 1 cut(s) 345
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 372, 411, 421
Bsp143I GATC 2 cut(s) 129, 232
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 3 cut(s) 348, 466, 468
BspANI GGCC 1 cut(s) 317
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 85, 466
BssMI GATC 2 cut(s) 129, 232
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 3 cut(s) 209, 314, 319
BstC8I GCNNGC 2 cut(s) 380, 473
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 2 cut(s) 85, 466
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 468
BstKTI GATC 2 cut(s) 132, 235
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 2 cut(s) 129, 232
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNI CCWGG 3 cut(s) 209, 314, 319
BstSCI CCNGG 3 cut(s) 207, 312, 317
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 285, 325
BsuRI GGCC 1 cut(s) 317
BtgI CCRYGG 2 cut(s) 85, 466
BtrI CACGTC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 380, 473
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 89, 116
Cfr42I CCGCGG 1 cut(s) 469
Csp6I GTAC 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 1 cut(s) 86
CviJI RGCY 7 cut(s) 291, 312, 317, 378, 385, 463, 471
CviKI_1 RGCY 7 cut(s) 291, 312, 317, 378, 385, 463, 471
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 126
DpnI GATC 2 cut(s) 131, 234
DpnII GATC 2 cut(s) 129, 232
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 89, 116
EcoRII CCWGG 3 cut(s) 207, 312, 317
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 87, 94, 159, 231, 261, 296
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 3 cut(s) 5, 383, 469
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 5, 383, 469
FspBI CTAG 1 cut(s) 218
GluI GCNGC 3 cut(s) 5, 383, 469
HaeIII GGCC 1 cut(s) 317
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 89
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 89, 416
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 204, 253
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 204, 253
Hsp92II CATG 1 cut(s) 89
KspI CCGCGG 1 cut(s) 469
Kzo9I GATC 2 cut(s) 129, 232
LmnI GCTCC 2 cut(s) 288, 468
Lsp1109I GCAGC 1 cut(s) 394
MaeI CTAG 1 cut(s) 218
MaeII ACGT 2 cut(s) 204, 253
MalI GATC 2 cut(s) 131, 234
MboI GATC 2 cut(s) 129, 232
MboII GAAGA 1 cut(s) 445
MhlI GDGCHC 3 cut(s) 372, 411, 421
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 3 cut(s) 267, 338, 435
MseI TTAA 2 cut(s) 102, 165
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 3 cut(s) 209, 314, 319
MvaI CCWGG 3 cut(s) 209, 314, 319
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 309
NcoI CCATGG 1 cut(s) 85
NdeII GATC 2 cut(s) 129, 232
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 3 cut(s) 6, 384, 470
Psp6I CCWGG 3 cut(s) 207, 312, 317
PspGI CCWGG 3 cut(s) 207, 312, 317
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 89, 116
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 414
SacII CCGCGG 1 cut(s) 469
SaqAI TTAA 2 cut(s) 102, 165
SatI GCNGC 3 cut(s) 5, 383, 469
Sau3AI GATC 2 cut(s) 129, 232
Sau96I GGNCC 2 cut(s) 89, 116
ScrFI CCNGG 3 cut(s) 209, 314, 319
SduI GDGCHC 3 cut(s) 372, 411, 421
SetI ASST 8 cut(s) 102, 207, 256, 285, 293, 380, 446, 465
Sfr303I CCGCGG 1 cut(s) 469
SgrBI CCGCGG 1 cut(s) 469
SinI GGWCC 2 cut(s) 89, 116
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 348, 466, 468
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 3 cut(s) 207, 312, 317
StyI CCWWGG 1 cut(s) 85
TaiI ACGT 2 cut(s) 207, 256
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 471
Tru1I TTAA 2 cut(s) 102, 165
Tru9I TTAA 2 cut(s) 102, 165
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 4, 382
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 2 cut(s) 129, 447
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 89, 116
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.