Rh6BG093000

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000410
Physical Location & Seq
Reverse (-)
14670059 .. 14670709
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG093000.1

Sequence Viewer

Length: 516 bp
ATGGGATCCAATTTTGCACAAGCACTTTCTGCAGTGTTGCTAATTGCTTCAATGGTGGCAATTAGCACAGCCAACAAGGATTGGCAGCATGGGAACTACACTGGCTGGGGTTTTAACCATGGTCCATTCCACCTTAACAAGACAAACGGACCTAGCAAGATTGTTGTCGGTGGCTCCGAAAACTGGCATTATGGTTTTAACTATGCAGATTGGTCTTTGAAAAATGGCCCATTTTACGTCCAGGATACTCTAGTTTTCAAGTATAATCCACCAAACAACACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTAAGCCAGGCCAGGATGGTGGGAAGTCCAACACAAGGAGGCGGAGACGGCGTTCAGTTTGTGCTGAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGCGAGCACAATGGTACACATTGTAAAGACGGAATGATGAGGTTCTTCGTGTTCCCAAAGCTTCGCGGCTGGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

171

Amino Acids

19.23

Weight (kDa)

8.76

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 501
AciI CCGC 2 cut(s) 381, 501
AclWI GGATC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 425
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 302, 451
AfiI CCNNNNNNNGG 2 cut(s) 183, 374
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 51, 220, 259
AjnI CCWGG 3 cut(s) 240, 345, 350
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
AluBI AGCT 3 cut(s) 324, 411, 496
AluI AGCT 3 cut(s) 324, 411, 496
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 226, 348
ApeKI GCWGC 2 cut(s) 85, 415
AspS9I GGNCC 3 cut(s) 122, 149, 227
AvaII GGWCC 2 cut(s) 122, 149
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BamHI GGATCC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 97, 427
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 3 cut(s) 242, 347, 352
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 2 cut(s) 153, 251
BfmI CTRYAG 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 340
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 3 cut(s) 86, 416, 502
BlsI GCNGC 3 cut(s) 87, 417, 503
Bme1390I CCNGG 3 cut(s) 242, 347, 352
Bme18I GGWCC 2 cut(s) 122, 149
BmgT120I GGNCC 3 cut(s) 122, 149, 227
BmiI GGNNCC 2 cut(s) 7, 175
BmrFI CCNGG 3 cut(s) 242, 347, 352
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 4 cut(s) 271, 301, 375, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 374
Bse1I ACTGG 2 cut(s) 106, 188
BseBI CCWGG 3 cut(s) 242, 347, 352
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 183, 374
BseNI ACTGG 2 cut(s) 106, 188
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 97, 427
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 2 cut(s) 228, 350
BsiHKAI GWGCWC 1 cut(s) 444
BslI CCNNNNNNNGG 2 cut(s) 183, 374
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
BsnI GGCC 2 cut(s) 228, 350
Bsp1286I GDGCHC 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 2 cut(s) 381, 501
BspANI GGCC 2 cut(s) 228, 350
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 7, 175
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 2 cut(s) 106, 188
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 242, 347, 352
Bst6I CTCTTC 1 cut(s) 401
BstAFI CTTAAG 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 413, 440, 506
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 501
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 3 cut(s) 29, 342, 387
BstNI CCWGG 3 cut(s) 242, 347, 352
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 3 cut(s) 240, 345, 350
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 97, 427
BstX2I RGATCY 1 cut(s) 5
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 228, 350
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 360
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 99
Cac8I GCNNGC 3 cut(s) 413, 440, 506
Cfr13I GGNCC 3 cut(s) 122, 149, 227
Csp6I GTAC 2 cut(s) 301, 450
CviAII CATG 3 cut(s) 89, 119, 304
CviQI GTAC 2 cut(s) 301, 450
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 122, 149
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 240, 345, 350
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 3 cut(s) 92, 122, 307
FaiI YATR 7 cut(s) 90, 120, 192, 204, 264, 305, 329
FatI CATG 3 cut(s) 88, 118, 303
Fnu4HI GCNGC 3 cut(s) 86, 416, 502
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 3 cut(s) 86, 416, 502
FspBI CTAG 2 cut(s) 153, 251
GluI GCNGC 3 cut(s) 86, 416, 502
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 2 cut(s) 228, 350
Hin1II CATG 3 cut(s) 92, 122, 307
HindIII AAGCTT 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 301, 452
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 2 cut(s) 301, 452
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 17, 32, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 342, 387
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 92, 122, 307
Kzo9I GATC 1 cut(s) 5
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 2 cut(s) 179, 321
Lsp1109I GCAGC 2 cut(s) 97, 427
MaeI CTAG 2 cut(s) 153, 251
MaeII ACGT 1 cut(s) 237
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 2 cut(s) 418, 472
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 3 cut(s) 10, 42, 60
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 4 cut(s) 297, 300, 371, 468
MseI TTAA 4 cut(s) 114, 135, 198, 341
MspCI CTTAAG 1 cut(s) 340
MspR9I CCNGG 3 cut(s) 242, 347, 352
MvaI CCWGG 3 cut(s) 242, 347, 352
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 29, 342, 387
NcoI CCATGG 1 cut(s) 118
NdeII GATC 1 cut(s) 5
NlaIII CATG 3 cut(s) 92, 122, 307
NlaIV GGNNCC 2 cut(s) 7, 175
NspI RCATGY 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 401
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 435
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 3 cut(s) 87, 417, 503
Psp6I CCWGG 3 cut(s) 240, 345, 350
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 3 cut(s) 240, 345, 350
PspN4I GGNNCC 2 cut(s) 7, 175
PspPI GGNCC 3 cut(s) 122, 149, 227
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 2 cut(s) 302, 451
RsaNI GTAC 2 cut(s) 301, 450
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 4 cut(s) 114, 135, 198, 341
SatI GCNGC 3 cut(s) 86, 416, 502
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 3 cut(s) 122, 149, 227
ScrFI CCNGG 3 cut(s) 242, 347, 352
SduI GDGCHC 1 cut(s) 444
SetI ASST 9 cut(s) 135, 154, 240, 289, 318, 326, 413, 479, 498
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 2 cut(s) 122, 149
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 3 cut(s) 10, 42, 60
SsiI CCGC 2 cut(s) 381, 501
SspMI CTAG 2 cut(s) 153, 251
StyD4I CCNGG 3 cut(s) 240, 345, 350
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 240
TasI AATT 3 cut(s) 10, 42, 60
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 504
Tru1I TTAA 4 cut(s) 114, 135, 198, 341
Tru9I TTAA 4 cut(s) 114, 135, 198, 341
TscAI CASTG 2 cut(s) 39, 106
TseI GCWGC 2 cut(s) 85, 415
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 2 cut(s) 162, 480
TspRI CASTG 2 cut(s) 39, 106
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 122, 149
XceI RCATGY 1 cut(s) 307
XspI CTAG 2 cut(s) 153, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.