Rh2BG049500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000410
Physical Location & Seq
Forward (+)
3502857 .. 3503063
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG049500.1

Sequence Viewer

Length: 207 bp
ATGTTGGATGACCATGAGTATAGTATGACCGAGGTCTCTGCAGTGAAATCGAAGGTTAATTTCTCGGCGAATCCGGCAGTACTCTCACTCTTCGATCTCAGAGGTTTCAGAATCCGGAACTCCATTACAATTCCATCACCACATGGAACCGCGACGGAATCTTTCTCCGCCGTCTTCTTCAGAAATCACCGGAGTCGCAAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.67

Weight (kDa)

9.98

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 2 cut(s) 150, 168
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 40
Aor13HI TCCGGA 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 129, 179
BbsI GAAGAC 1 cut(s) 166
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 4 cut(s) 20, 30, 54, 64
BcoDI GTCTC 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 148
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 2 cut(s) 114, 189
BseAI TCCGGA 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 152
BsiSI CCGG 3 cut(s) 74, 115, 190
BsmAI GTCTC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 2 cut(s) 150, 168
BspCNI CTCAG 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 152
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPAI GACNNNNGTC 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 39
BstUI CGCG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 14, 143
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 163
FaeI CATG 2 cut(s) 17, 146
FaiI YATR 4 cut(s) 15, 21, 26, 144
FatI CATG 2 cut(s) 13, 142
FokI GGATG 1 cut(s) 20
HapII CCGG 3 cut(s) 74, 115, 190
Hin1II CATG 2 cut(s) 17, 146
HinfI GANTC 4 cut(s) 70, 111, 158, 193
HpaII CCGG 3 cut(s) 74, 115, 190
HphI GGTGA 2 cut(s) 129, 179
Hpy188I TCNGA 3 cut(s) 101, 110, 182
Hpy188III TCNNGA 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 2 cut(s) 17, 146
Kpn2I TCCGGA 1 cut(s) 114
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 87, 128, 203
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 3 cut(s) 82, 166, 169
MluCI AATT 2 cut(s) 58, 129
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 2 cut(s) 25, 95
MroI TCCGGA 1 cut(s) 114
MseI TTAA 1 cut(s) 57
MspI CCGG 3 cut(s) 74, 115, 190
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 17, 146
NlaIV GGNNCC 1 cut(s) 148
NmeAIII GCCGAG 1 cut(s) 44
PfeI GAWTC 3 cut(s) 70, 111, 158
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 43
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 1 cut(s) 202
SetI ASST 4 cut(s) 36, 57, 106, 204
SfcI CTRYAG 1 cut(s) 39
SgeI CNNG 8 cut(s) 26, 43, 76, 86, 127, 155, 163, 202
Sse9I AATT 2 cut(s) 58, 129
SsiI CCGC 2 cut(s) 150, 168
TaqI TCGA 2 cut(s) 50, 93
TaqII GACCGA 1 cut(s) 44
TasI AATT 2 cut(s) 58, 129
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 3 cut(s) 70, 111, 158
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 48
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.