Rmu_co8402997.1_g000001

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8402997.1
OG0000410
Physical Location & Seq
Reverse (-)
371 .. 1178
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8402997.1_g000001.1.cds

Sequence Viewer

Length: 432 bp
atgaattacagtcgtgcacaattagggttcattctccttgtagctgctacttctctgttagcagcgagtgaggccaaaactgttgtcgtcggaggttctaaaggctggcgttttggtttcaactacactgactgggctctccaaaacagtcccttttacatcaacgatgaattggtgttcaagtatggtccgccaagcaagaccaactctggttacagcgtttacttgctgccaaacctgtggagctacattacctgtgatttcagcaaagccaagatattggcgagtcagactcaaggaggtggtaagggctttaaggttgtgctgaatcaatggaggccttactactttgctagtggtaacaaggatggctacaattgcaaggatggactcatgaagctctttgctgtgccacttccacattggaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

143

Amino Acids

15.96

Weight (kDa)

9.44

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AgsI TTSAA 2 cut(s) 121, 181
AluBI AGCT 3 cut(s) 44, 246, 400
AluI AGCT 3 cut(s) 44, 246, 400
Alw21I GWGCWC 1 cut(s) 19
Alw44I GTGCAC 1 cut(s) 15
AoxI GGCC 2 cut(s) 72, 338
ApaLI GTGCAC 1 cut(s) 15
ApeKI GCWGC 3 cut(s) 44, 62, 229
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 31, 74, 216
BccI CCATC 2 cut(s) 362, 380
BfaI CTAG 1 cut(s) 354
BisI GCNGC 3 cut(s) 45, 63, 230
BlsI GCNGC 3 cut(s) 46, 64, 231
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmrI ACTGGG 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpuEI CTTGAG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 373, 391
BseNI ACTGG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 3 cut(s) 31, 74, 216
BshFI GGCC 2 cut(s) 74, 340
BsiHKAI GWGCWC 1 cut(s) 19
BslFI GGGAC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 74, 340
Bsp1286I GDGCHC 2 cut(s) 19, 139
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 74, 340
BspHI TCATGA 1 cut(s) 393
BsrI ACTGG 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 11, 82, 149
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 2 cut(s) 373, 391
BstMWI GCNNNNNNNGC 2 cut(s) 71, 378
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 31, 74, 216
BstXI CCANNNNNNTGG 2 cut(s) 240, 280
BsuRI GGCC 2 cut(s) 74, 340
BtsCI GGATG 2 cut(s) 373, 391
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 107
CciI TCATGA 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 1 cut(s) 394
EciI GGCGGA 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 1 cut(s) 397
FaiI YATR 2 cut(s) 186, 395
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 45, 63, 230
FokI GGATG 2 cut(s) 380, 398
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 45, 63, 230
FspBI CTAG 1 cut(s) 354
GluI GCNGC 3 cut(s) 45, 63, 230
HaeIII GGCC 2 cut(s) 74, 340
Hin1II CATG 1 cut(s) 397
HinfI GANTC 4 cut(s) 286, 292, 328, 390
Hpy166II GTNNAC 2 cut(s) 17, 223
Hpy188I TCNGA 2 cut(s) 92, 291
Hpy188III TCNNGA 1 cut(s) 394
Hpy8I GTNNAC 2 cut(s) 17, 223
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 3 cut(s) 11, 82, 149
HpyCH4V TGCA 2 cut(s) 17, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 378
Hsp92II CATG 1 cut(s) 397
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 5 cut(s) 91, 118, 195, 251, 268
Lsp1109I GCAGC 3 cut(s) 31, 74, 216
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 212, 359
MfeI CAATTG 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 19, 139
MluCI AATT 5 cut(s) 4, 20, 170, 376, 427
MlyI GAGTC 3 cut(s) 286, 295, 384
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 64, 86, 293, 330
MseI TTAA 2 cut(s) 315, 430
MunI CAATTG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 71, 378
NlaIII CATG 1 cut(s) 397
PagI TCATGA 1 cut(s) 393
PceI AGGCCT 1 cut(s) 340
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 3 cut(s) 46, 64, 231
PleI GAGTC 3 cut(s) 286, 294, 384
PpsI GAGTC 3 cut(s) 286, 294, 384
PspPI GGNCC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 315, 430
SatI GCNGC 3 cut(s) 45, 63, 230
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 3 cut(s) 286, 295, 384
SduI GDGCHC 2 cut(s) 19, 139
SetI ASST 8 cut(s) 46, 97, 240, 248, 257, 304, 321, 402
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 5 cut(s) 4, 20, 170, 376, 427
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 354
StuI AGGCCT 1 cut(s) 340
TaaI ACNGT 3 cut(s) 11, 82, 149
TasI AATT 5 cut(s) 4, 20, 170, 376, 427
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 315, 430
Tru9I TTAA 2 cut(s) 315, 430
TscAI CASTG 1 cut(s) 133
TseI GCWGC 3 cut(s) 44, 62, 229
TspDTI ATGAA 4 cut(s) 17, 19, 183, 410
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.