Rh1BG127700

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000410
Physical Location & Seq
Reverse (-)
21565899 .. 21585084
19186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG127700.1

Sequence Viewer

Length: 642 bp
ATGGGTTTGATGAATTACAGTCGTGCACAATTAGGGTTCATTCTCCTTGTAGCTGCTACTTCTCTGTTAGCAGTGAGTGAGGCCAAAACTATTGTCGTCGGAGATTCTGAAGGCTGGCGTTTTGGTTTCAACTACACTGACTGGGCTCTCCAAAACAGTCCCTTTTACATCAACGATGAATTGGTGTTCAAGTATGATCCACCAAGCAAGACCAACTCTGGTTACAGCGTTTACTTGCTGCCAAACCTGTGGAGCTACATTACCTGTGATTTCAGCAAAGCCAAGATATTGGCGAGTGAGACTCAAGGAGGTGGTAAGGGCTTTAAGGTTGTGCTGAATCAATGGAGGCCTTACTACTTTGCTAGTGGTAACAAGGATGGCTACAATTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACATTGGAATATGGCCGAGGTCTCTGCAGTGAAATCGAAGGTTAATTTCTCGGCGAATCCGGCAGTACTCTCACTCTTCGATCTCAGAGGTTTCGGAATCCAGAACTCCATTACAATTCCATCACCACATGGAACCGCGACGGAATCTTTCTCCGCCATGTTCTTCAGAAATCACCAGAGCCGCAAGGTGGTGGAGATCGAAAGACGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

213

Amino Acids

23.86

Weight (kDa)

9.15

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 566
AciI CCGC 3 cut(s) 564, 582, 610
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 441
AcuI CTGAAG 2 cut(s) 129, 577
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 1 cut(s) 616
AgsI TTSAA 2 cut(s) 130, 190
AluBI AGCT 3 cut(s) 53, 255, 409
AluI AGCT 3 cut(s) 53, 255, 409
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 2 cut(s) 293, 454
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 1 cut(s) 191
AoxI GGCC 3 cut(s) 81, 347, 441
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 53, 238
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AsuHPI GGTGA 2 cut(s) 543, 593
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 40, 225
BccI CCATC 3 cut(s) 371, 389, 556
BcgI CGANNNNNNTGC 4 cut(s) 434, 444, 468, 478
BcoDI GTCTC 2 cut(s) 293, 454
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 3 cut(s) 54, 239, 610
BlsI GCNGC 3 cut(s) 55, 240, 611
BmcAI AGTACT 1 cut(s) 495
BmiI GGNNCC 1 cut(s) 562
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BpuEI CTTGAG 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 2 cut(s) 382, 400
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 1 cut(s) 526
BseNI ACTGG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 2 cut(s) 40, 225
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 3 cut(s) 83, 349, 443
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 2 cut(s) 293, 454
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 3 cut(s) 83, 349, 443
Bso31I GGTCTC 1 cut(s) 454
Bsp1286I GDGCHC 2 cut(s) 28, 148
Bsp143I GATC 3 cut(s) 196, 508, 624
BspACI CCGC 3 cut(s) 564, 582, 610
BspANI GGCC 3 cut(s) 83, 349, 443
BspCNI CTCAG 1 cut(s) 525
BspFNI CGCG 1 cut(s) 566
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 562
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 454
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 3 cut(s) 196, 508, 624
Bst4CI ACNGT 2 cut(s) 20, 158
Bst6I CTCTTC 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 512
BstF5I GGATG 2 cut(s) 382, 400
BstFNI CGCG 1 cut(s) 566
BstKTI GATC 3 cut(s) 199, 511, 627
BstMAI GTCTC 2 cut(s) 293, 454
BstMBI GATC 3 cut(s) 196, 508, 624
BstMWI GCNNNNNNNGC 2 cut(s) 387, 488
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 28
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 2 cut(s) 40, 225
BstXI CCANNNNNNTGG 2 cut(s) 249, 289
BsuRI GGCC 3 cut(s) 83, 349, 443
BtsCI GGATG 2 cut(s) 382, 400
BtsI GCAGTG 2 cut(s) 78, 462
BtsIMutI CAGTG 3 cut(s) 78, 135, 462
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 402
Csp6I GTAC 1 cut(s) 494
CviAII CATG 3 cut(s) 403, 557, 586
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 1 cut(s) 512
DpnI GATC 3 cut(s) 198, 510, 626
DpnII GATC 3 cut(s) 196, 508, 624
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
EciI GGCGGA 1 cut(s) 571
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 129, 577
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 3 cut(s) 406, 560, 589
FaiI YATR 5 cut(s) 195, 404, 440, 558, 587
FaqI GGGAC 1 cut(s) 144
FatI CATG 3 cut(s) 402, 556, 585
Fnu4HI GCNGC 3 cut(s) 54, 239, 610
FokI GGATG 2 cut(s) 389, 407
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 3 cut(s) 54, 239, 610
FspBI CTAG 1 cut(s) 363
GluI GCNGC 3 cut(s) 54, 239, 610
HaeIII GGCC 3 cut(s) 83, 349, 443
HapII CCGG 1 cut(s) 488
Hin1II CATG 3 cut(s) 406, 560, 589
HinfI GANTC 8 cut(s) 104, 301, 337, 399, 484, 525, 572, 636
HpaII CCGG 1 cut(s) 488
HphI GGTGA 2 cut(s) 543, 593
Hpy166II GTNNAC 2 cut(s) 26, 232
Hpy188I TCNGA 6 cut(s) 101, 109, 515, 524, 596, 641
Hpy188III TCNNGA 2 cut(s) 403, 529
Hpy8I GTNNAC 2 cut(s) 26, 232
Hpy99I CGWCG 2 cut(s) 101, 571
HpyAV CCTTC 2 cut(s) 104, 460
HpyCH4III ACNGT 2 cut(s) 20, 158
HpyCH4V TGCA 3 cut(s) 26, 390, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 488
HpyF3I CTNAG 1 cut(s) 512
Hsp92II CATG 3 cut(s) 406, 560, 589
Kzo9I GATC 3 cut(s) 196, 508, 624
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 8 cut(s) 100, 127, 204, 260, 277, 501, 542, 617
Lsp1109I GCAGC 2 cut(s) 40, 225
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 221, 368
MalI GATC 3 cut(s) 198, 510, 626
MboI GATC 3 cut(s) 196, 508, 624
MboII GAAGA 2 cut(s) 496, 583
MfeI CAATTG 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 28, 148
MluCI AATT 6 cut(s) 13, 29, 179, 385, 472, 543
MlyI GAGTC 2 cut(s) 295, 393
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 5 cut(s) 73, 302, 339, 439, 509
MseI TTAA 2 cut(s) 324, 471
MspI CCGG 1 cut(s) 488
MunI CAATTG 1 cut(s) 385
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 387, 488
NdeII GATC 3 cut(s) 196, 508, 624
NlaIII CATG 3 cut(s) 406, 560, 589
NlaIV GGNNCC 1 cut(s) 562
NmeAIII GCCGAG 2 cut(s) 458, 469
PagI TCATGA 1 cut(s) 402
PceI AGGCCT 1 cut(s) 349
PfeI GAWTC 6 cut(s) 104, 337, 484, 525, 572, 636
PkrI GCNGC 3 cut(s) 55, 240, 611
PleI GAGTC 2 cut(s) 295, 393
PpsI GAGTC 2 cut(s) 295, 393
PspN4I GGNNCC 1 cut(s) 562
PstI CTGCAG 1 cut(s) 457
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SaqAI TTAA 2 cut(s) 324, 471
SatI GCNGC 3 cut(s) 54, 239, 610
Sau3AI GATC 3 cut(s) 196, 508, 624
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 2 cut(s) 295, 393
SduI GDGCHC 2 cut(s) 28, 148
SfcI CTRYAG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 6 cut(s) 13, 29, 179, 385, 472, 543
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 3 cut(s) 564, 582, 610
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 349
TaaI ACNGT 2 cut(s) 20, 158
TaqI TCGA 3 cut(s) 464, 507, 627
TasI AATT 6 cut(s) 13, 29, 179, 385, 472, 543
TatI WGTACW 1 cut(s) 493
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 6 cut(s) 104, 337, 484, 525, 572, 636
Tru1I TTAA 2 cut(s) 324, 471
Tru9I TTAA 2 cut(s) 324, 471
TscAI CASTG 3 cut(s) 78, 142, 462
TseI GCWGC 2 cut(s) 53, 238
TspDTI ATGAA 4 cut(s) 26, 28, 192, 419
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 3 cut(s) 78, 142, 462
VneI GTGCAC 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.