Rh6CG090600

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000410
Physical Location & Seq
Reverse (-)
9974020 .. 9975109
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG090600.1

Sequence Viewer

Length: 525 bp
ATGGCTTCCACGTTTGCACAAGCCCTTTTTGCAATGCTGCTAATTGCTTCAATGGTAGCAGTTAGCACAGCCAACAAGGATTGGCAGCAGGGGAACTACACTGGCTGGGGTTTCAACCGTGGTCCATATCACCTCAACAAGACAGAAGGACGTCCACGACCCAACAAGATCATTGTTGGTGGCTCCGAAAATTGGCATTATGGTTTTAACTATGCAGATTGGTCTCTGAAAAATGCCTCATTTTACGTCCACGACACTCTGGTTTTCAAGTATGATCCGCCAAACAACACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATACACTGCGACTTAAGCAAGGCCAAGATGGTGGGAAGTCCAACACAAGGAGGTGGAAACGGCTTTGAGTTTGTGCTCAAGAGCTCGCGGCCTTACTACTTTGCTTGTGGCGAGCACAATGGTACACATTGTAAAGACGGAATGATGAGGTTCTTCGTGTTCCCAAAGCTTCGCGGCTGGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

174

Amino Acids

19.79

Weight (kDa)

9.26

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 154
AccII CGCG 2 cut(s) 424, 510
AciI CCGC 3 cut(s) 278, 424, 510
AclWI GGATC 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 2 cut(s) 311, 460
AfiI CCNNNNNNNGG 2 cut(s) 192, 383
AflII CTTAAG 1 cut(s) 349
AgsI TTSAA 3 cut(s) 51, 115, 268
AluBI AGCT 3 cut(s) 333, 420, 505
AluI AGCT 3 cut(s) 333, 420, 505
Alw21I GWGCWC 3 cut(s) 414, 422, 453
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 269
AoxI GGCC 2 cut(s) 357, 425
ApeKI GCWGC 2 cut(s) 37, 85
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 422
Bbv12I GWGCWC 3 cut(s) 414, 422, 453
BbvI GCAGC 2 cut(s) 24, 97
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 349
BisI GCNGC 4 cut(s) 38, 86, 425, 511
BlsI GCNGC 4 cut(s) 39, 87, 426, 512
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 383
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 192, 383
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 2 cut(s) 24, 97
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 424, 510
BshFI GGCC 2 cut(s) 359, 427
BsiHKAI GWGCWC 3 cut(s) 414, 422, 453
BslI CCNNNNNNNGG 2 cut(s) 192, 383
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 2 cut(s) 359, 427
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 3 cut(s) 414, 422, 453
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 168, 274
BspACI CCGC 3 cut(s) 278, 424, 510
BspANI GGCC 2 cut(s) 359, 427
BspFNI CGCG 2 cut(s) 424, 510
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 1 cut(s) 269
BspTI CTTAAG 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 168, 274
BssNI GRCGYC 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 349
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 422, 449, 515
BstDSI CCRYGG 1 cut(s) 118
BstFNI CGCG 2 cut(s) 424, 510
BstKTI GATC 2 cut(s) 171, 277
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 168, 274
BstMWI GCNNNNNNNGC 2 cut(s) 29, 351
BstNSI RCATGY 1 cut(s) 316
BstUI CGCG 2 cut(s) 424, 510
BstV1I GCAGC 2 cut(s) 24, 97
BstXI CCANNNNNNTGG 2 cut(s) 327, 367
BsuRI GGCC 2 cut(s) 359, 427
BtgI CCRYGG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 99, 340
Cac8I GCNNGC 3 cut(s) 422, 449, 515
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 310, 459
CviAII CATG 1 cut(s) 313
CviQI GTAC 2 cut(s) 310, 459
DpnI GATC 2 cut(s) 170, 276
DpnII GATC 2 cut(s) 168, 274
DraIII CACNNNGTG 1 cut(s) 307
EciI GGCGGA 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 422
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 422
FaeI CATG 1 cut(s) 316
FaiI YATR 6 cut(s) 127, 201, 213, 273, 314, 338
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 4 cut(s) 38, 86, 425, 511
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 4 cut(s) 38, 86, 425, 511
GluI GCNGC 4 cut(s) 38, 86, 425, 511
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 2 cut(s) 359, 427
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 503
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 4 cut(s) 155, 250, 310, 461
Hpy188I TCNGA 2 cut(s) 187, 228
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 4 cut(s) 155, 250, 310, 461
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 3 cut(s) 11, 151, 246
HpyCH4V TGCA 3 cut(s) 17, 32, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 351
HpySE526I ACGT 3 cut(s) 11, 151, 246
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 2 cut(s) 168, 274
LmnI GCTCC 2 cut(s) 188, 330
LpnPI CCDG 5 cut(s) 74, 87, 91, 245, 499
Lsp1109I GCAGC 2 cut(s) 24, 97
MaeII ACGT 3 cut(s) 11, 151, 246
MalI GATC 2 cut(s) 170, 276
MboI GATC 2 cut(s) 168, 274
MboII GAAGA 1 cut(s) 481
MhlI GDGCHC 3 cut(s) 414, 422, 453
MluCI AATT 2 cut(s) 42, 190
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 6 cut(s) 143, 247, 306, 309, 380, 477
MseI TTAA 2 cut(s) 207, 350
MspCI CTTAAG 1 cut(s) 349
MvnI CGCG 2 cut(s) 424, 510
MwoI GCNNNNNNNGC 2 cut(s) 29, 351
NdeII GATC 2 cut(s) 168, 274
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 184
NspI RCATGY 1 cut(s) 316
PkrI GCNGC 4 cut(s) 39, 87, 426, 512
Psp124BI GAGCTC 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 2 cut(s) 311, 460
RsaNI GTAC 2 cut(s) 310, 459
SacI GAGCTC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 207, 350
SatI GCNGC 4 cut(s) 38, 86, 425, 511
Sau3AI GATC 2 cut(s) 168, 274
Sau96I GGNCC 1 cut(s) 122
SduI GDGCHC 3 cut(s) 414, 422, 453
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 349, 413
SmoI CTYRAG 2 cut(s) 349, 413
Sse9I AATT 2 cut(s) 42, 190
SsiI CCGC 3 cut(s) 278, 424, 510
SstI GAGCTC 1 cut(s) 422
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 3 cut(s) 14, 154, 249
TasI AATT 2 cut(s) 42, 190
TatI WGTACW 1 cut(s) 309
TauI GCSGC 2 cut(s) 427, 513
Tru1I TTAA 2 cut(s) 207, 350
Tru9I TTAA 2 cut(s) 207, 350
TscAI CASTG 2 cut(s) 106, 347
TseI GCWGC 2 cut(s) 37, 85
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 2 cut(s) 106, 347
Vha464I CTTAAG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 122
XceI RCATGY 1 cut(s) 316
ZraI GACGTC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.