Rh1BG127600

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000410
Physical Location & Seq
Forward (+)
21559201 .. 21560626
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG127600.1

Sequence Viewer

Length: 444 bp
ATGGGTTTGATGAATTACAGTCGTGCACAATTAGGGTTCATTCTCCTTGTAGCTGCTACTTCTCTGTTAGCAGTGAGTGAGGCCAAAACTATTGTCGTCGGAGGTTCTGAAGGCTGGCGTTTTGGTTTCAACTACACTGACTGGGCTCTCCAAAACAGTCCCTTTTACATCAACGATGAATTGGTGTTCAAGTATGATCCACCAAGCAAGACCAACTCTGGTTACAGCGTTTACTTGCTGCCAAACCTGTGGAGCTACATTACCTGTGATTTCAGCAAAGCCAAGATATTGGCGAGTGAGACTCAAGGAGGTGGTAAGGGCTTTAAGGTTGTGCTGAATCAATGGAGGCCTTACTACTTTGCTAGTGGTAACAAGGATGGCTACAATTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACATTGGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

147

Amino Acids

16.54

Weight (kDa)

9.0

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 2 cut(s) 130, 190
AluBI AGCT 3 cut(s) 53, 255, 409
AluI AGCT 3 cut(s) 53, 255, 409
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 293
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 1 cut(s) 191
AoxI GGCC 2 cut(s) 81, 347
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 53, 238
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 40, 225
BccI CCATC 2 cut(s) 371, 389
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 363
BisI GCNGC 2 cut(s) 54, 239
BlsI GCNGC 2 cut(s) 55, 240
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BpuEI CTTGAG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 382, 400
BseNI ACTGG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 2 cut(s) 40, 225
BshFI GGCC 2 cut(s) 83, 349
BsiHKAI GWGCWC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 2 cut(s) 83, 349
Bsp1286I GDGCHC 2 cut(s) 28, 148
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 2 cut(s) 83, 349
BspHI TCATGA 1 cut(s) 402
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 146
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 20, 158
BstC8I GCNNGC 1 cut(s) 116
BstF5I GGATG 2 cut(s) 382, 400
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 40, 225
BstXI CCANNNNNNTGG 2 cut(s) 249, 289
BsuRI GGCC 2 cut(s) 83, 349
BtsCI GGATG 2 cut(s) 382, 400
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 135
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 402
CviAII CATG 1 cut(s) 403
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 1 cut(s) 406
FaiI YATR 2 cut(s) 195, 404
FaqI GGGAC 1 cut(s) 144
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 54, 239
FokI GGATG 2 cut(s) 389, 407
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 54, 239
FspBI CTAG 1 cut(s) 363
GluI GCNGC 2 cut(s) 54, 239
HaeIII GGCC 2 cut(s) 83, 349
Hin1II CATG 1 cut(s) 406
HinfI GANTC 3 cut(s) 301, 337, 399
Hpy166II GTNNAC 2 cut(s) 26, 232
Hpy188I TCNGA 2 cut(s) 101, 109
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 2 cut(s) 26, 232
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 20, 158
HpyCH4V TGCA 2 cut(s) 26, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
Hsp92II CATG 1 cut(s) 406
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 5 cut(s) 100, 127, 204, 260, 277
Lsp1109I GCAGC 2 cut(s) 40, 225
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 221, 368
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MfeI CAATTG 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 28, 148
MluCI AATT 4 cut(s) 13, 29, 179, 385
MlyI GAGTC 2 cut(s) 295, 393
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 73, 95, 302, 339
MseI TTAA 1 cut(s) 324
MunI CAATTG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 406
PagI TCATGA 1 cut(s) 402
PceI AGGCCT 1 cut(s) 349
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 2 cut(s) 55, 240
PleI GAGTC 2 cut(s) 295, 393
PpsI GAGTC 2 cut(s) 295, 393
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 54, 239
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 2 cut(s) 295, 393
SduI GDGCHC 2 cut(s) 28, 148
SetI ASST 8 cut(s) 55, 106, 249, 257, 266, 313, 330, 411
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 4 cut(s) 13, 29, 179, 385
SseBI AGGCCT 1 cut(s) 349
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 349
TaaI ACNGT 2 cut(s) 20, 158
TasI AATT 4 cut(s) 13, 29, 179, 385
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 78, 142
TseI GCWGC 2 cut(s) 53, 238
TspDTI ATGAA 4 cut(s) 26, 28, 192, 419
TspRI CASTG 2 cut(s) 78, 142
VneI GTGCAC 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.