Rorug05G0584700

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000410
Physical Location & Seq
Reverse (-)
78140735 .. 78141388
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0584700.1

Sequence Viewer

Length: 444 bp
ATGATCTTAGTTTCTGCAGAAGATCATGAGTTTGTGAAATCCATGGACCCGGAGCTTTTCGTTTTAAAGAAAGAAAAGCTCACCCATTTTCGCATGTATTGGCACGACGTTGTTGATGAATGTTCGTTCGACAACGCTCTTACCCAACCGAGCTCAAAACTTCTGGGAAGGGCTCAAGGGTTTTATGGATCTGCTTCACAAGAAGACATTAGCCTGTTGATGGCTCAGAACTTTGCTTTTGTTCAGGGAAAGTATAACGGTAGCACCATAACCCTGATGGGGAGGAATTCGATCTTGAACAAAGTGAGGGAGCTGTCTGTGATAGGAGGAAGTAGACTTTTCAGGTATGCTACGGGTTATGCTCTAGCAACCACTCAGTCGTTTAACGCGTCTAAAAGTGATGATGCTATAGTGGAGTATAATATCTATGTCTTGCATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

147

Amino Acids

16.61

Weight (kDa)

6.05

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 43 - 144 8.5e-34 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AccII CGCG 1 cut(s) 389
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 220, 279
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 4 cut(s) 55, 79, 153, 313
AluI AGCT 4 cut(s) 55, 79, 153, 313
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 155, 175
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 155
BccI CCATC 2 cut(s) 214, 271
BcnI CCSGG 1 cut(s) 50
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 2 cut(s) 15, 408
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 279
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 220, 279
BseMII CTCAG 2 cut(s) 239, 389
Bsh1236I CGCG 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 220, 279
Bsp1286I GDGCHC 2 cut(s) 155, 175
Bsp143I GATC 4 cut(s) 3, 22, 188, 291
Bsp19I CCATGG 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 238, 388
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 4 cut(s) 3, 22, 188, 291
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 260
BstDEI CTNAG 3 cut(s) 7, 225, 375
BstDSI CCRYGG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 4 cut(s) 6, 25, 191, 294
BstMBI GATC 4 cut(s) 3, 22, 188, 291
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 2 cut(s) 15, 408
BstUI CGCG 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 42
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 1 cut(s) 378
CviAII CATG 3 cut(s) 26, 43, 94
CviJI RGCY 7 cut(s) 55, 79, 153, 173, 213, 224, 313
CviKI_1 RGCY 7 cut(s) 55, 79, 153, 173, 213, 224, 313
DdeI CTNAG 3 cut(s) 7, 225, 375
DpnI GATC 4 cut(s) 5, 24, 190, 293
DpnII GATC 4 cut(s) 3, 22, 188, 291
DraI TTTAAA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 2 cut(s) 155, 175
Eco47I GGWCC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 2 cut(s) 155, 175
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 29, 46, 97
FatI CATG 3 cut(s) 25, 42, 93
FblI GTMKAC 1 cut(s) 334
FriOI GRGCYC 2 cut(s) 155, 175
FspBI CTAG 1 cut(s) 365
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 378
Hin1II CATG 3 cut(s) 29, 46, 97
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 26, 295
Hpy8I GTNNAC 1 cut(s) 335
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 17, 436
HpyF3I CTNAG 3 cut(s) 7, 225, 375
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 3 cut(s) 29, 46, 97
Kzo9I GATC 4 cut(s) 3, 22, 188, 291
LmnI GCTCC 2 cut(s) 52, 310
LpnPI CCDG 6 cut(s) 63, 149, 227, 230, 287, 328
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 108
MalI GATC 4 cut(s) 5, 24, 190, 293
MboI GATC 4 cut(s) 3, 22, 188, 291
MboII GAAGA 2 cut(s) 32, 215
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 155, 175
MluCI AATT 1 cut(s) 286
MluI ACGCGT 1 cut(s) 387
MnlI CCTC 3 cut(s) 276, 300, 320
MseI TTAA 3 cut(s) 65, 384, 442
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 389
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 42
NdeII GATC 4 cut(s) 3, 22, 188, 291
NlaIII CATG 3 cut(s) 29, 46, 97
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 97
PagI TCATGA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 188
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 65, 384, 442
Sau3AI GATC 4 cut(s) 3, 22, 188, 291
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 2 cut(s) 155, 175
SetI ASST 6 cut(s) 57, 81, 111, 155, 315, 347
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 2 cut(s) 15, 408
SinI GGWCC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 365
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 129, 290
TasI AATT 1 cut(s) 286
Tru1I TTAA 3 cut(s) 65, 384, 442
Tru9I TTAA 3 cut(s) 65, 384, 442
TspDTI ATGAA 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 334
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.