Rh6BG434400

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000410
Physical Location & Seq
Reverse (-)
65442976 .. 65444026
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG434400.1

Sequence Viewer

Length: 438 bp
ATGGCTTTCATCAGTTACACTACACATGGCTTCATCCTCCTCCTAGCTGCTGCTTCTCTATTGGCAGTCAGCGACGCCAAAACCATTGTCGTTGGAGGGAGCGAAGGATGGCGTTTCGGCTTCAACTACACCGATTGGGTCTTCAAAAACAGCCCTTTTTACATAAATGACGAACTGGTGTTCAAGTATGATCCGCCAAGCGAGAACAACAGCGGCTACAGTGTCTACCTGCTGCCCAACCTGTGGAGCTACATCAAATGCGACTTCAGCAAGGCCAAGATGTTGGCCGGTCCAAACCAAGGCGGCGGCGAGGGGTTCAAGGTTGAGCTGAACCAGTGGAGGCCTTACTACTTTGCCAGTGGTGATAAAGATGGCTACAATTGCCAGGACGGGCTCATGAAGTTCTTTGCCGTGCCACTTCCTCATTGGAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

145

Amino Acids

16.37

Weight (kDa)

5.57

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 243
AccI GTMKAC 1 cut(s) 225
AciI CCGC 4 cut(s) 194, 213, 303, 306
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 243, 299
AgsI TTSAA 4 cut(s) 124, 145, 184, 319
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 3 cut(s) 47, 249, 328
AluI AGCT 3 cut(s) 47, 249, 328
AlwI GGATC 1 cut(s) 185
AoxI GGCC 3 cut(s) 273, 285, 341
ApeKI GCWGC 3 cut(s) 47, 50, 232
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 3 cut(s) 34, 37, 219
BccI CCATC 2 cut(s) 102, 365
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 386
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 237
BisI GCNGC 6 cut(s) 48, 51, 214, 233, 304, 307
BlsI GCNGC 6 cut(s) 49, 52, 215, 234, 305, 308
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 299
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 3 cut(s) 180, 334, 357
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 33, 113
BseLI CCNNNNNNNGG 2 cut(s) 243, 299
BseNI ACTGG 3 cut(s) 180, 334, 357
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 34, 37, 219
BshFI GGCC 3 cut(s) 275, 287, 343
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 2 cut(s) 243, 299
BsnI GGCC 3 cut(s) 275, 287, 343
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 4 cut(s) 194, 213, 303, 306
BspANI GGCC 3 cut(s) 275, 287, 343
BspHI TCATGA 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 3 cut(s) 180, 334, 357
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 75
BstF5I GGATG 2 cut(s) 33, 113
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 267, 381
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 34, 37, 219
BstV2I GAAGAC 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 283
BsuRI GGCC 3 cut(s) 275, 287, 343
BtsCI GGATG 2 cut(s) 33, 113
BtsIMutI CAGTG 3 cut(s) 226, 341, 364
BveI ACCTGC 1 cut(s) 237
CciI TCATGA 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 1 cut(s) 83
CviAII CATG 2 cut(s) 26, 397
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 285
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 298
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 29, 400
FaiI YATR 4 cut(s) 27, 164, 189, 398
FatI CATG 2 cut(s) 25, 396
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 6 cut(s) 48, 51, 214, 233, 304, 307
FokI GGATG 2 cut(s) 20, 120
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 6 cut(s) 48, 51, 214, 233, 304, 307
FspBI CTAG 1 cut(s) 44
GluI GCNGC 6 cut(s) 48, 51, 214, 233, 304, 307
HaeIII GGCC 3 cut(s) 275, 287, 343
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 29, 400
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 381
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 29, 400
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 99, 246
LpnPI CCDG 8 cut(s) 161, 242, 254, 301, 347, 370, 371, 398
Lsp1109I GCAGC 3 cut(s) 34, 37, 219
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 133
MfeI CAATTG 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 6 cut(s) 47, 50, 89, 304, 333, 432
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 379
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 267, 381
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 29, 400
PagI TCATGA 1 cut(s) 396
PceI AGGCCT 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 6 cut(s) 49, 52, 215, 234, 305, 308
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspPI GGNCC 1 cut(s) 290
SatI GCNGC 6 cut(s) 48, 51, 214, 233, 304, 307
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 396
SetI ASST 6 cut(s) 49, 231, 243, 251, 324, 330
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 1 cut(s) 290
Sse9I AATT 1 cut(s) 379
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 4 cut(s) 194, 213, 303, 306
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 221
TasI AATT 1 cut(s) 379
TauI GCSGC 3 cut(s) 216, 306, 309
TscAI CASTG 3 cut(s) 226, 341, 364
TseI GCWGC 3 cut(s) 47, 50, 232
TspDTI ATGAA 2 cut(s) 22, 413
TspRI CASTG 3 cut(s) 226, 341, 364
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.