Rorug05G0584600

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000410
Physical Location & Seq
Reverse (-)
78137490 .. 78138074
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0584600.1

Sequence Viewer

Length: 585 bp
ATGGCCAGAATACCTCCCATCGTTACTACACAGTTCATAGTTCTCTCCCTTCTTTCTTCCTTTGCCCTAATTTTGGTCCAGGGAGAAGATGATCACGATTTCGTGACAGCCATGGACCGCGATCTCTTGGGGCTCAAGAAAGAAAAGCTCAGCCACTTCAAGTTGTACTGGCATGACATTGTGAGCGGCAAAAACCCAAGCTCAATCGGAGTGGTGAAATCACCCGTTAACTCATCAACGCTCTTCGGATTCGTGAGTATGATCGACGATCCCCTCACCGAAAAGCCGGAGCTGAGCTCGAAGCTGCTGGGGAGGGCTCAAGGGTTCTACGCATCAGCTTCACAACAGGAGGTCGGGCTGTTGATGGCTATGAATTTTCATTTTATTCAGGGCAAGTACAACGGGAGCACCATAACTGTGCTGGGGAGGAACCCAGTGTTCAACAAGGTGAGGGAGATGCCGGTGATCGGAGGAAGTGGGCTTTTCAGGTTTGCAAGAGGTTATGTTGAAGCAAGAACTCATACATTTACTGCGAGCACCGGAGATGCCATCGTTGAGTACAATGCCTATGTGCTCCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

194

Amino Acids

21.45

Weight (kDa)

7.97

Isoelectric Point (pI)

26.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 51 - 191 1.4e-56 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 186
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 118, 186
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 373
AfaI GTAC 3 cut(s) 167, 398, 560
AfiI CCNNNNNNNGG 2 cut(s) 73, 467
AgsI TTSAA 3 cut(s) 160, 442, 509
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 6 cut(s) 148, 201, 292, 297, 304, 338
AluI AGCT 6 cut(s) 148, 201, 292, 297, 304, 338
Alw21I GWGCWC 4 cut(s) 299, 410, 539, 576
AlwI GGATC 1 cut(s) 263
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 373
AspS9I GGNCC 2 cut(s) 76, 115
AsuHPI GGTGA 5 cut(s) 213, 226, 268, 460, 475
AvaII GGWCC 2 cut(s) 76, 115
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 135, 299, 319
Bbv12I GWGCWC 4 cut(s) 299, 410, 539, 576
BbvI GCAGC 1 cut(s) 291
BccI CCATC 3 cut(s) 26, 358, 557
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 91
BisI GCNGC 2 cut(s) 187, 305
BlpI GCTNAGC 2 cut(s) 149, 293
BlsI GCNGC 2 cut(s) 188, 306
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 2 cut(s) 76, 115
BmgT120I GGNCC 2 cut(s) 76, 115
BmiI GGNNCC 1 cut(s) 431
BmrFI CCNGG 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 3 cut(s) 341, 447, 535
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu1102I GCTNAGC 2 cut(s) 149, 293
BpuEI CTTGAG 2 cut(s) 119, 303
BsaJI CCNNGG 2 cut(s) 79, 111
BsaWI WCCGGW 1 cut(s) 539
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 467
Bse118I RCCGGY 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 173, 434
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 79, 111
BseLI CCNNNNNNNGG 2 cut(s) 73, 467
BseMII CTCAG 2 cut(s) 163, 284
BseNI ACTGG 2 cut(s) 173, 434
BseXI GCAGC 1 cut(s) 291
BseYI CCCAGC 2 cut(s) 307, 421
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 4 cut(s) 299, 410, 539, 576
BsiSI CCGG 3 cut(s) 287, 461, 540
BslI CCNNNNNNNGG 2 cut(s) 73, 467
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 6 cut(s) 135, 299, 319, 410, 539, 576
Bsp143I GATC 5 cut(s) 91, 121, 261, 268, 465
Bsp1720I GCTNAGC 2 cut(s) 149, 293
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 2 cut(s) 118, 186
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 162, 285
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 431
BspPI GGATC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 460
BsrI ACTGG 2 cut(s) 173, 434
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 79, 111
BssMI GATC 5 cut(s) 91, 121, 261, 268, 465
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 33, 418
Bst6I CTCTTC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 2 cut(s) 149, 293
BstDSI CCRYGG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 5 cut(s) 94, 124, 264, 271, 468
BstMBI GATC 5 cut(s) 91, 121, 261, 268, 465
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 535
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 76, 115
Csp6I GTAC 3 cut(s) 166, 397, 559
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 2 cut(s) 112, 173
CviQI GTAC 3 cut(s) 166, 397, 559
DdeI CTNAG 2 cut(s) 149, 293
DpnI GATC 5 cut(s) 93, 123, 263, 270, 467
DpnII GATC 5 cut(s) 91, 121, 261, 268, 465
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 3 cut(s) 135, 299, 319
Eco47I GGWCC 2 cut(s) 76, 115
Eco53kI GAGCTC 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 3 cut(s) 135, 299, 319
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 115, 176
FaiI YATR 9 cut(s) 38, 113, 174, 260, 371, 413, 504, 522, 570
FatI CATG 2 cut(s) 111, 172
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 187, 305
FriOI GRGCYC 3 cut(s) 135, 299, 319
Fsp4HI GCNGC 2 cut(s) 187, 305
GluI GCNGC 2 cut(s) 187, 305
GsaI CCCAGC 2 cut(s) 311, 425
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 287, 461, 540
Hin1II CATG 2 cut(s) 115, 176
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 3 cut(s) 287, 461, 540
HphI GGTGA 5 cut(s) 213, 226, 268, 460, 475
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 209, 248, 470
Hpy188III TCNNGA 4 cut(s) 95, 103, 136, 253
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 33, 418
HpyCH4V TGCA 1 cut(s) 494
HpyF3I CTNAG 2 cut(s) 149, 293
Hsp92II CATG 2 cut(s) 115, 176
Ksp22I TGATCA 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 5 cut(s) 91, 121, 261, 268, 465
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 3 cut(s) 289, 405, 579
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 3 cut(s) 341, 447, 535
MaeIII GTNAC 2 cut(s) 22, 103
MalI GATC 5 cut(s) 93, 123, 263, 270, 467
MbiI CCGCTC 1 cut(s) 186
MboI GATC 5 cut(s) 91, 121, 261, 268, 465
MboII GAAGA 3 cut(s) 48, 98, 235
MhlI GDGCHC 6 cut(s) 135, 299, 319, 410, 539, 576
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 69, 373
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 24, 284, 306, 343, 420, 444, 464, 491
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 287, 461, 540
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 111
NdeII GATC 5 cut(s) 91, 121, 261, 268, 465
NlaIII CATG 2 cut(s) 115, 176
NlaIV GGNNCC 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 188, 306
Psp124BI GAGCTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 2 cut(s) 307, 421
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 2 cut(s) 76, 115
RsaI GTAC 3 cut(s) 167, 398, 560
RsaNI GTAC 3 cut(s) 166, 397, 559
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 187, 305
Sau3AI GATC 5 cut(s) 91, 121, 261, 268, 465
Sau96I GGNCC 2 cut(s) 76, 115
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 6 cut(s) 135, 299, 319, 410, 539, 576
SfaNI GCATC 3 cut(s) 341, 447, 535
SinI GGWCC 2 cut(s) 76, 115
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 134, 318
SmoI CTYRAG 2 cut(s) 134, 318
Sse9I AATT 2 cut(s) 69, 373
SsiI CCGC 2 cut(s) 118, 186
SstI GAGCTC 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 33, 418
TaqI TCGA 2 cut(s) 264, 299
TasI AATT 2 cut(s) 69, 373
TatI WGTACW 3 cut(s) 165, 396, 558
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 25, 368, 386
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 2 cut(s) 76, 115
XapI RAATTY 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.