RchiOBHm_Chr6g0258971

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000410
Physical Location & Seq
Reverse (-)
14321543 .. 14322150
608 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23222

Sequence Viewer

Length: 465 bp
ATGGTGGCAATTAGCACAGCCAACAAGGATTGGCAGCATGGGAACTATACTGGCTGGGGTTTTAACCATGGTCCATTCCACCTGAACAAGACAAACGGACCCAGCAAGATTGTTGTCGGCGGCTCCGAAAACTGGCATTATGGTTTTAACTATGCAGATTGGTCTCTGAAAAATGGCCCATTTTACGTTCAGGATACTCTAGTTTTCAAGTATAATCCACCAAACAACACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTAAGCCAGGCCAGGATGGTGGGAAGTCCAACACAAGGAGGCGGAAACGGCGTTCAGTTTGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGCGAGCACAATGGTACGCATTGTAAAGACGGAATGATGAGGTTCTTCGTGTTCCCAAAGCTTCGCGGCTGGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

154

Amino Acids

17.56

Weight (kDa)

8.99

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 450
AciI CCGC 3 cut(s) 120, 330, 450
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 2 cut(s) 251, 400
AfiI CCNNNNNNNGG 2 cut(s) 132, 323
AflII CTTAAG 1 cut(s) 289
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 2 cut(s) 294, 299
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 3 cut(s) 273, 360, 445
AluI AGCT 3 cut(s) 273, 360, 445
Alw21I GWGCWC 2 cut(s) 354, 393
Alw26I GTCTC 1 cut(s) 168
AoxI GGCC 2 cut(s) 175, 297
ApeKI GCWGC 2 cut(s) 34, 364
AspS9I GGNCC 3 cut(s) 71, 98, 176
AvaII GGWCC 2 cut(s) 71, 98
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
Bbv12I GWGCWC 2 cut(s) 354, 393
BbvI GCAGC 2 cut(s) 46, 376
BccI CCATC 1 cut(s) 298
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 296, 301
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 4 cut(s) 35, 121, 365, 451
BlsI GCNGC 4 cut(s) 36, 122, 366, 452
Bme1390I CCNGG 2 cut(s) 296, 301
Bme18I GGWCC 2 cut(s) 71, 98
BmgT120I GGNCC 3 cut(s) 71, 98, 176
BmiI GGNNCC 2 cut(s) 100, 124
BmrFI CCNGG 2 cut(s) 296, 301
BpuEI CTTGAG 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 323
Bse1I ACTGG 2 cut(s) 55, 137
BseBI CCWGG 2 cut(s) 296, 301
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 132, 323
BseNI ACTGG 2 cut(s) 55, 137
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 46, 376
BseYI CCCAGC 2 cut(s) 54, 101
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 177, 299
BsiHKAI GWGCWC 2 cut(s) 354, 393
BslI CCNNNNNNNGG 2 cut(s) 132, 323
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 2 cut(s) 177, 299
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 354, 393
Bsp1407I TGTACA 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 3 cut(s) 120, 330, 450
BspANI GGCC 2 cut(s) 177, 299
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 100, 124
BspTI CTTAAG 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 2 cut(s) 55, 137
BssECI CCNNGG 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 296, 301
BstAFI CTTAAG 1 cut(s) 289
BstAUI TGTACA 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 362, 389, 455
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 450
BstMAI GTCTC 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 291, 336
BstNI CCWGG 2 cut(s) 296, 301
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 294, 299
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 46, 376
BstXI CCANNNNNNTGG 2 cut(s) 267, 307
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 177, 299
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 362, 389, 455
Cfr13I GGNCC 3 cut(s) 71, 98, 176
Csp6I GTAC 2 cut(s) 250, 399
CviAII CATG 3 cut(s) 38, 68, 253
CviQI GTAC 2 cut(s) 250, 399
DraIII CACNNNGTG 1 cut(s) 247
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 71, 98
EcoRII CCWGG 2 cut(s) 294, 299
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 41, 71, 256
FaiI YATR 8 cut(s) 39, 48, 69, 141, 153, 213, 254, 278
FatI CATG 3 cut(s) 37, 67, 252
Fnu4HI GCNGC 4 cut(s) 35, 121, 365, 451
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 4 cut(s) 35, 121, 365, 451
FspBI CTAG 1 cut(s) 200
GluI GCNGC 4 cut(s) 35, 121, 365, 451
GsaI CCCAGC 2 cut(s) 58, 105
HaeIII GGCC 2 cut(s) 177, 299
Hin1II CATG 3 cut(s) 41, 71, 256
HindIII AAGCTT 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 127, 168
Hpy188III TCNNGA 2 cut(s) 191, 355
Hpy8I GTNNAC 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 336
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 3 cut(s) 41, 71, 256
LmnI GCTCC 2 cut(s) 128, 270
Lsp1109I GCAGC 2 cut(s) 46, 376
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 186
MboII GAAGA 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 354, 393
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 4 cut(s) 246, 249, 320, 417
MseI TTAA 3 cut(s) 63, 147, 290
MspCI CTTAAG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 296, 301
MvaI CCWGG 2 cut(s) 296, 301
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 291, 336
NcoI CCATGG 1 cut(s) 67
NlaIII CATG 3 cut(s) 41, 71, 256
NlaIV GGNNCC 2 cut(s) 100, 124
NspI RCATGY 1 cut(s) 256
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 384
PkrI GCNGC 4 cut(s) 36, 122, 366, 452
Psp6I CCWGG 2 cut(s) 294, 299
PspFI CCCAGC 2 cut(s) 54, 101
PspGI CCWGG 2 cut(s) 294, 299
PspN4I GGNNCC 2 cut(s) 100, 124
PspPI GGNCC 3 cut(s) 71, 98, 176
RsaI GTAC 2 cut(s) 251, 400
RsaNI GTAC 2 cut(s) 250, 399
SaqAI TTAA 3 cut(s) 63, 147, 290
SatI GCNGC 4 cut(s) 35, 121, 365, 451
Sau96I GGNCC 3 cut(s) 71, 98, 176
ScrFI CCNGG 2 cut(s) 296, 301
SduI GDGCHC 2 cut(s) 354, 393
SetI ASST 8 cut(s) 84, 189, 238, 267, 275, 362, 428, 447
SinI GGWCC 2 cut(s) 71, 98
SmlI CTYRAG 2 cut(s) 289, 353
SmoI CTYRAG 2 cut(s) 289, 353
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 120, 330, 450
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 294, 299
StyI CCWWGG 1 cut(s) 67
TaiI ACGT 1 cut(s) 189
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 249
TauI GCSGC 2 cut(s) 123, 453
Tru1I TTAA 3 cut(s) 63, 147, 290
Tru9I TTAA 3 cut(s) 63, 147, 290
TseI GCWGC 2 cut(s) 34, 364
TspDTI ATGAA 1 cut(s) 265
TspGWI ACGGA 2 cut(s) 111, 429
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 71, 98
XceI RCATGY 1 cut(s) 256
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.