RchiOBHm_Chr1g0339151

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000410
Physical Location & Seq
Reverse (-)
30464060 .. 30464359
300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56610

Sequence Viewer

Length: 300 bp
ATGATAATTGTTTTCTGCTTAATATGTATCAATGGTGCAGTGTTCAAGTATGATCCTCCAAGCAAGACCAACTCAGGTTACAGCGTGTACTTGCTCCCCAACCTGTGGAGCTACATAACTTGTGACTTCAGCAAAGCCAAGATACTGGCGAGTGAGACCCGAGGAGATGGTGAGGGCTTTAAGGTTGAACTGAATCAATGGAGGCCTTATTACTTTGCTAGTGGTAACAAAGATGGCTACAATTGCAAGGATGGACTCATGAAGCTTTTTGCTGTGCCACTTCCACGTTGGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

99

Amino Acids

11.34

Weight (kDa)

8.9

Isoelectric Point (pI)

25.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 112
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 2 cut(s) 46, 188
AluBI AGCT 2 cut(s) 111, 265
AluI AGCT 2 cut(s) 111, 265
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 159
BccI CCATC 3 cut(s) 161, 227, 245
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 205
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 159
Bsp143I GATC 1 cut(s) 52
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 258
BspPI GGATC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 145
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
CciI TCATGA 1 cut(s) 258
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 259
CviJI RGCY 6 cut(s) 111, 137, 177, 205, 237, 265
CviKI_1 RGCY 6 cut(s) 111, 137, 177, 205, 237, 265
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 73
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eco147I AGGCCT 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 159
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 25, 51, 116, 260
FatI CATG 1 cut(s) 258
FokI GGATG 1 cut(s) 263
FspBI CTAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 205
Hin1II CATG 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 2 cut(s) 193, 255
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 38, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 2 cut(s) 99, 108
LpnPI CCDG 3 cut(s) 60, 116, 131
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 3 cut(s) 77, 122, 224
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MfeI CAATTG 1 cut(s) 241
MluCI AATT 2 cut(s) 6, 241
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 4 cut(s) 66, 155, 166, 195
MseI TTAA 2 cut(s) 20, 180
MunI CAATTG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 122
PagI TCATGA 1 cut(s) 258
PceI AGGCCT 1 cut(s) 205
PfeI GAWTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 105
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 20, 180
Sau3AI GATC 1 cut(s) 52
SchI GAGTC 1 cut(s) 249
SetI ASST 6 cut(s) 79, 105, 113, 186, 267, 289
Sse9I AATT 2 cut(s) 6, 241
SseBI AGGCCT 1 cut(s) 205
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 205
TaiI ACGT 1 cut(s) 289
TasI AATT 2 cut(s) 6, 241
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 20, 180
Tru9I TTAA 2 cut(s) 20, 180
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.