FvH4_2g35020

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000410
Physical Location & Seq
Reverse (-)
25896115 .. 25897081
967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35020.t1

Sequence Viewer

Length: 438 bp
ATGGCTTCCATCAGTTACACTACACAAGGCTTCATTCTCCTCCTAGCTGCTGCTTCTCTGTTAGCAGTTAGCGAGGCCAAAACCATTGTCGTCGGAGGGAGTGAAGGCTGGCGTTTCGGCTTTAACTACACAGAATGGGTCCTCCAAAACAGCCCTTTCTACATAAATGACGAACTCGTGTTCAAGTATGATCCACCAAGCGGGAAGAACAGTGGCTACAGCGTGTACCTGCTTCCCAACCTGTGGAGTTACATAAGCTGCGACTTCAGCAAGGCCAAGATATTGGCCGGTCCAAACCAGGGTGCCGGCGAGGGCTTCAAAGTTGAACTTAACCAGTGGAGGCCTTACTATTTTGCCAGCGGTGACAAAAATGGTTACAACTGCAAGGACGGGCTCATGAAGCTCTTCGCTGTGCCACTTCCGCACTGGAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

146

Amino Acids

16.16

Weight (kDa)

6.55

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 3 cut(s) 201, 360, 422
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 250
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 200, 243, 299
AgsI TTSAA 3 cut(s) 184, 319, 326
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 3 cut(s) 47, 258, 403
AluI AGCT 3 cut(s) 47, 258, 403
AlwI GGATC 1 cut(s) 185
AoxI GGCC 4 cut(s) 75, 273, 285, 341
ApeKI GCWGC 3 cut(s) 47, 50, 258
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 139, 290
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 2 cut(s) 139, 290
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 396
BauI CACGAG 1 cut(s) 176
BbvI GCAGC 3 cut(s) 34, 37, 245
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 299
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 237
BisI GCNGC 3 cut(s) 48, 51, 259
BlsI GCNGC 3 cut(s) 49, 52, 260
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 2 cut(s) 139, 290
BmgT120I GGNCC 2 cut(s) 139, 290
BmiI GGNNCC 2 cut(s) 140, 304
BmrFI CCNGG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 243, 299
Bse118I RCCGGY 2 cut(s) 287, 305
Bse1I ACTGG 2 cut(s) 334, 431
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 298
BseLI CCNNNNNNNGG 3 cut(s) 200, 243, 299
BseNI ACTGG 2 cut(s) 334, 431
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 34, 37, 245
BshFI GGCC 4 cut(s) 77, 275, 287, 343
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 288, 306
BslI CCNNNNNNNGG 3 cut(s) 200, 243, 299
BsnI GGCC 4 cut(s) 77, 275, 287, 343
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 3 cut(s) 201, 360, 422
BspANI GGCC 4 cut(s) 77, 275, 287, 343
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 140, 304
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 287, 305
BsrI ACTGG 2 cut(s) 334, 431
BssAI RCCGGY 2 cut(s) 287, 305
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 110, 307, 358
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 267, 400, 421
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 34, 37, 245
BstXI CCANNNNNNTGG 1 cut(s) 283
BsuRI GGCC 4 cut(s) 77, 275, 287, 343
BtsIMutI CAGTG 3 cut(s) 217, 341, 424
BveI ACCTGC 1 cut(s) 237
Cac8I GCNNGC 3 cut(s) 110, 307, 358
CciI TCATGA 1 cut(s) 396
Cfr10I RCCGGY 2 cut(s) 287, 305
Cfr13I GGNCC 2 cut(s) 139, 290
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 397
CviQI GTAC 1 cut(s) 226
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 139, 290
Eco57I CTGAAG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 396
FaeI CATG 1 cut(s) 400
FaiI YATR 4 cut(s) 164, 189, 254, 398
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 1 cut(s) 396
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 48, 51, 259
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 48, 51, 259
FspBI CTAG 1 cut(s) 44
GluI GCNGC 3 cut(s) 48, 51, 259
HaeIII GGCC 4 cut(s) 77, 275, 287, 343
HapII CCGG 2 cut(s) 288, 306
Hin1II CATG 1 cut(s) 400
HpaII CCGG 2 cut(s) 288, 306
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 267, 400, 421
Hsp92II CATG 1 cut(s) 400
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Kzo9I GATC 1 cut(s) 190
LguI GCTCTTC 1 cut(s) 410
Lsp1109I GCAGC 3 cut(s) 34, 37, 245
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 4 cut(s) 14, 248, 362, 374
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 217, 397
MhlI GDGCHC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 6 cut(s) 50, 67, 89, 152, 304, 333
MroNI GCCGGC 1 cut(s) 305
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 2 cut(s) 123, 330
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 2 cut(s) 288, 306
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 267, 400, 421
NaeI GCCGGC 1 cut(s) 307
NdeII GATC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 2 cut(s) 140, 304
NmuCI GTSAC 1 cut(s) 362
PagI TCATGA 1 cut(s) 396
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 410
PdiI GCCGGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 3 cut(s) 49, 52, 260
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 140, 304
PspPI GGNCC 2 cut(s) 139, 290
PspPPI RGGWCCY 1 cut(s) 139
PsrI GAACNNNNNNTAC 2 cut(s) 200, 232
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 2 cut(s) 123, 330
SatI GCNGC 3 cut(s) 48, 51, 259
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 139, 290
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 396
SetI ASST 5 cut(s) 49, 231, 243, 260, 405
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 2 cut(s) 139, 290
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 3 cut(s) 201, 360, 422
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 212
Tru1I TTAA 2 cut(s) 123, 330
Tru9I TTAA 2 cut(s) 123, 330
TscAI CASTG 3 cut(s) 217, 341, 431
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 3 cut(s) 47, 50, 258
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 22, 413
TspRI CASTG 3 cut(s) 217, 341, 431
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 139, 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.