FvH4_2g10150

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000410
Physical Location & Seq
Reverse (-)
8993036 .. 8994083
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10150.t1

Sequence Viewer

Length: 516 bp
ATGGGTTCCAAGTTTGCACAAGCACTTCTTGCAATGCTGCTAATTGCTTCGATGGTGGCATTTAGCACAGCCAGCAAGGACTGGCAGCAGCGGAACTACACTGGCTGGGGTTTCAACCATGGTCCATATCACCTCAACAAGACTGAAGGACCCAACAAGATCGTTGTCGGTGGCTCGGAAAACTGGCATTATGGTTTTAACTATGCAGATTGGTCTCTGAAAAACGCCTCATTTTACGTCCAGGACACTCTAGTTTTCAAGTATGATCCACCAACCAACTCCACAGGTCCTCACAGCGTGTACTTGCTACCAAACCTCTGGAGCTACATACACTGCGACTTAAGCCAGGCCAAGATGGTGGCAGGTCCGACACAAGGAGGCGGTAACGGCTTTGAGTTTGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCCTGCGGCGAGCATGGCGGTGCTCATTGTAAAGACGGAATGATGAGGTTCTTCGTCTTCCCAAAGCTTCGTGGCTGGCATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

172

Amino Acids

19.34

Weight (kDa)

8.71

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AciI CCGC 4 cut(s) 91, 381, 435, 447
AclWI GGATC 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 374
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 115, 259
AjnI CCWGG 2 cut(s) 240, 345
AluBI AGCT 3 cut(s) 324, 411, 496
AluI AGCT 3 cut(s) 324, 411, 496
Alw21I GWGCWC 2 cut(s) 405, 454
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 4 cut(s) 37, 85, 88, 415
AspS9I GGNCC 4 cut(s) 122, 149, 287, 365
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 4 cut(s) 122, 149, 287, 365
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 405, 454
BbvI GCAGC 4 cut(s) 24, 97, 100, 427
BccI CCATC 2 cut(s) 46, 349
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 2 cut(s) 242, 347
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 5 cut(s) 38, 86, 89, 416, 436
BlsI GCNGC 5 cut(s) 39, 87, 90, 417, 437
Bme1390I CCNGG 2 cut(s) 242, 347
Bme18I GGWCC 4 cut(s) 122, 149, 287, 365
BmgT120I GGNCC 4 cut(s) 122, 149, 287, 365
BmiI GGNNCC 2 cut(s) 7, 151
BmrFI CCNGG 2 cut(s) 242, 347
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 3 cut(s) 86, 106, 188
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 2 cut(s) 242, 347
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 3 cut(s) 86, 106, 188
BseXI GCAGC 4 cut(s) 24, 97, 100, 427
BseYI CCCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 2 cut(s) 405, 454
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 219
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 405, 454
Bsp143I GATC 2 cut(s) 159, 265
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 4 cut(s) 91, 381, 435, 447
BspANI GGCC 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 7, 151
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 3 cut(s) 86, 106, 188
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 159, 265
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 242, 347
BstAFI CTTAAG 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 5 cut(s) 73, 413, 433, 440, 506
BstDSI CCRYGG 1 cut(s) 118
BstKTI GATC 2 cut(s) 162, 268
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 159, 265
BstMWI GCNNNNNNNGC 5 cut(s) 29, 72, 342, 387, 444
BstNI CCWGG 2 cut(s) 242, 347
BstSCI CCNGG 2 cut(s) 240, 345
BstV1I GCAGC 4 cut(s) 24, 97, 100, 427
BstV2I GAAGAC 1 cut(s) 478
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 99, 331
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 5 cut(s) 73, 413, 433, 440, 506
Cfr13I GGNCC 4 cut(s) 122, 149, 287, 365
Csp6I GTAC 1 cut(s) 301
CviAII CATG 2 cut(s) 119, 443
CviQI GTAC 1 cut(s) 301
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
DraIII CACNNNGTG 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 4 cut(s) 122, 149, 287, 365
Eco57I CTGAAG 1 cut(s) 165
EcoO109I RGGNCCY 2 cut(s) 149, 287
EcoRII CCWGG 2 cut(s) 240, 345
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 122, 446
FaiI YATR 7 cut(s) 120, 127, 192, 204, 264, 329, 444
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 2 cut(s) 118, 442
Fnu4HI GCNGC 5 cut(s) 38, 86, 89, 416, 436
Fsp4HI GCNGC 5 cut(s) 38, 86, 89, 416, 436
FspBI CTAG 1 cut(s) 251
GluI GCNGC 5 cut(s) 38, 86, 89, 416, 436
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 1 cut(s) 350
Hin1II CATG 2 cut(s) 122, 446
HindIII AAGCTT 1 cut(s) 494
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 178, 219, 369
Hpy188III TCNNGA 2 cut(s) 319, 406
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 17, 32, 206
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 72, 342, 387, 444
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 122, 446
Kzo9I GATC 2 cut(s) 159, 265
LmnI GCTCC 1 cut(s) 321
Lsp1109I GCAGC 4 cut(s) 24, 97, 100, 427
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 161, 267
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 2 cut(s) 472, 478
MhlI GDGCHC 2 cut(s) 405, 454
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 6 cut(s) 143, 238, 300, 326, 371, 468
MseI TTAA 3 cut(s) 198, 341, 514
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 91
MspCI CTTAAG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 242, 347
MvaI CCWGG 2 cut(s) 242, 347
MwoI GCNNNNNNNGC 5 cut(s) 29, 72, 342, 387, 444
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 159, 265
NlaIII CATG 2 cut(s) 122, 446
NlaIV GGNNCC 2 cut(s) 7, 151
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 5 cut(s) 39, 87, 90, 417, 437
PpuMI RGGWCCY 2 cut(s) 149, 287
Psp5II RGGWCCY 2 cut(s) 149, 287
Psp6I CCWGG 2 cut(s) 240, 345
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 2 cut(s) 240, 345
PspN4I GGNNCC 2 cut(s) 7, 151
PspPI GGNCC 4 cut(s) 122, 149, 287, 365
PspPPI RGGWCCY 2 cut(s) 149, 287
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 3 cut(s) 198, 341, 514
SatI GCNGC 5 cut(s) 38, 86, 89, 416, 436
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 4 cut(s) 122, 149, 287, 365
ScrFI CCNGG 2 cut(s) 242, 347
SduI GDGCHC 2 cut(s) 405, 454
SetI ASST 9 cut(s) 135, 240, 289, 318, 326, 367, 413, 479, 498
SinI GGWCC 4 cut(s) 122, 149, 287, 365
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 340, 404
SmoI CTYRAG 2 cut(s) 340, 404
Sse9I AATT 1 cut(s) 42
SsiI CCGC 4 cut(s) 91, 381, 435, 447
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 240, 345
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 438
Tru1I TTAA 3 cut(s) 198, 341, 514
Tru9I TTAA 3 cut(s) 198, 341, 514
TscAI CASTG 2 cut(s) 106, 338
TseI GCWGC 4 cut(s) 37, 85, 88, 415
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 2 cut(s) 106, 338
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 4 cut(s) 122, 149, 287, 365
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.