pycom10g07320

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000410
Physical Location & Seq
Forward (+)
8592656 .. 8593458
803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07320.2

Sequence Viewer

Length: 510 bp
ATGGGTTCCAATTATGCTCAAATTACACTAGCAATGGTGCTAATTGCTTCAATGCTGGCAGTTAGCACAGCCAACAAGGATTGGCAATATGGTAATTACAGCGGTTGGGACTTCAGCCATGGCTCATATCACCCCAATAAGACCCAAGGACCAAACAAGATCGTTGTTGGTGGCTCAGAAAACTGGCATTTCGGATTCAACTACACAGAATGGGCTTTGAAGAATGGACCATTTTACATCAAGGACACTCTCGTTTTCAAGTATGATCCACCGAATAACACCACACATCCTCACAGCGTCTACTTGTTCCAAGACTTTCGGAGCTTCTTGAACTGTGACTTGAGTCGAGCAAGAATGGTGGGAAATCAAACACAAGGAGGCGGAGACGGCTTTGAGTTTGTTCTCAAGAGGTGGCAGCCTTACTACTTCGCTTGCGGCGAGCGTGATGGTTTACATTGTAAGGACGGATTGATGAGGTTCCCTGTCTTCCCAATGTTTCGTGGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

170

Amino Acids

19.4

Weight (kDa)

8.4

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AciI CCGC 3 cut(s) 102, 381, 435
AclWI GGATC 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 97
AgsI TTSAA 5 cut(s) 51, 199, 220, 259, 331
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 149, 227
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 149, 227
BbsI GAAGAC 1 cut(s) 478
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 440
BceAI ACGGC 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 1 cut(s) 29
BisI GCNGC 2 cut(s) 416, 436
BlsI GCNGC 2 cut(s) 417, 437
Bme18I GGWCC 2 cut(s) 149, 227
BmgT120I GGNCC 2 cut(s) 149, 227
BmiI GGNNCC 2 cut(s) 7, 479
BoxI GACNNNNGTC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 478
BpuEI CTTGAG 2 cut(s) 361, 389
BsaJI CCNNGG 2 cut(s) 118, 145
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 118, 145
BseGI GGATG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 427
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 159, 265
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 3 cut(s) 102, 381, 435
BspCNI CTCAG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 7, 479
BspPI GGATC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 118, 145
BssMI GATC 2 cut(s) 159, 265
BssT1I CCWWGG 2 cut(s) 118, 145
Bst4CI ACNGT 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 57, 433, 440
BstDEI CTNAG 1 cut(s) 175
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 162, 268
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 159, 265
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstPAI GACNNNNGTC 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 478
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 3 cut(s) 57, 433, 440
Cfr13I GGNCC 2 cut(s) 149, 227
CseI GACGC 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 1 cut(s) 119
CviJI RGCY 9 cut(s) 71, 117, 123, 174, 215, 324, 390, 418, 504
CviKI_1 RGCY 9 cut(s) 71, 117, 123, 174, 215, 324, 390, 418, 504
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 118, 145
Eco47I GGWCC 2 cut(s) 149, 227
Eco57I CTGAAG 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 118, 145
ErhI CCWWGG 2 cut(s) 118, 145
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 15, 90, 120, 127, 264
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 416, 436
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 2 cut(s) 416, 436
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 416, 436
HgaI GACGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 122
HinfI GANTC 2 cut(s) 195, 343
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 301, 452
Hpy188I TCNGA 3 cut(s) 178, 194, 321
Hpy188III TCNNGA 2 cut(s) 328, 406
Hpy8I GTNNAC 2 cut(s) 301, 452
HpyCH4III ACNGT 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 2 cut(s) 159, 265
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 3 cut(s) 41, 169, 495
Lsp1109I GCAGC 1 cut(s) 427
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 161, 267
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 2 cut(s) 232, 478
MluCI AATT 4 cut(s) 10, 21, 42, 94
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 4 cut(s) 300, 371, 402, 468
MspA1I CMGCKG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 387
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 159, 265
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 7, 479
NmuCI GTSAC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 417, 437
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PshAI GACNNNNGTC 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 7, 479
PspPI GGNCC 2 cut(s) 149, 227
SatI GCNGC 2 cut(s) 416, 436
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 2 cut(s) 149, 227
SchI GAGTC 1 cut(s) 352
SetI ASST 3 cut(s) 326, 413, 479
SinI GGWCC 2 cut(s) 149, 227
SmlI CTYRAG 2 cut(s) 340, 404
SmoI CTYRAG 2 cut(s) 340, 404
Sse9I AATT 4 cut(s) 10, 21, 42, 94
SsiI CCGC 3 cut(s) 102, 381, 435
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 2 cut(s) 118, 145
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 346
TasI AATT 4 cut(s) 10, 21, 42, 94
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 1 cut(s) 195
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 335
TspGWI ACGGA 1 cut(s) 480
VpaK11BI GGWCC 2 cut(s) 149, 227
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.