Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001095

Physical Location & Seq

Genomic Coordinates Reverse (-)

11693095 .. 11693622

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTACATACAAGCGATGGTCTTGAGTTTGCTTTTCTTGGAGAAAGTAATGGTACAAAGGAAATGAAATTAGTCTCTTCTGATGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATATTGTGAATCTCGTCGTTGAAGACAGTGAGATAGATGAAGATTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTCCGAAAACCTAAGAGAAAGGAAGAGACTACAACAATTATACTACAAGAAAACCTGCAATTTGCAACTCCAATATTAGTCCCAAAATGGTTGCAAACAAGGTTGTTACGACTACTTAGTGACGATATTAAACCGTCGCTAAATAATAAAGTCGCAAAATGGTCGCCGATTAGCGACGAATTGCGGACGCGTTCTGTTAGTCGTAAATATGCGACTGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015934 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030627 GO:0031323 GO:0031324 GO:0032991 GO:0033119 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036002 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043484 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:1903312 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

144

Amino Acids

16.4

Weight (kDa)

6.61

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29790 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G43880 AT4G07526 AT4G07526 AT4G07526 AT4G16807
fragaria_vesca	FvH4_2g33151 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900
malus_domestica	MD06G1050900.v1.1
prunus_persica	Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1
pyrus_communis	pycom06g04320
rosa_chinensis	RchiOBHm_Chr1g0325401 RchiOBHm_Chr7g0204751
rosa_laevigata	RLG00000003436 RLG00000010189 RLG00000012666
rosa_multiflora	Rmu_sc0002157.1_g000033 Rmu_sc0003221.1_g000060
rosa_roxburghii	Rroxscaffold_3G00252850 Rroxscaffold_5G00333620
rosa_rugosa	Rorug03G0305000 Rorug03G0305400.1 Rorug07G0085800
rosa_samantha	Rh2CG177800 Rh3DG262600 Rh4AG008300 Rh4AG009100 Rh4AG009600 Rh4AG021000 Rh4BG006400 Rh4CG009000 Rh4CG010000 Rh4CG010100 Rh4DG007700 Rh5AG385100 Rh5CG420300 Rh6AG282900 Rh6AG404200 Rh6BG283700 Rh6CG285600 Rh6DG278700 Rh7AG215800 Rh7BG212900 Rh7CG229000 Rh7DG223400
rosa_wichuraiana	Rw4G000190 Rw4G000230 Rw7G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AccII	CGCG	1 cut(s)	400
AciI	CCGC	1 cut(s)	394
AfaI	GTAC	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	146
Alw26I	GTCTC	3 cut(s)	79, 102, 230
BbsI	GAAGAC	1 cut(s)	153
BccI	CCATC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BcoDI	GTCTC	3 cut(s)	79, 102, 230
BfuAI	ACCTGC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	79, 102, 230
BsmFI	GGGAC	1 cut(s)	275
BspACI	CCGC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	152, 345, 427
Bst6I	CTCTTC	2 cut(s)	82, 228
BstDEI	CTNAG	4 cut(s)	99, 189, 222, 326
BstFNI	CGCG	1 cut(s)	400
BstMAI	GTCTC	3 cut(s)	79, 102, 230
BstUI	CGCG	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	273
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	54
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	4 cut(s)	99, 189, 222, 326
Eam1104I	CTCTTC	2 cut(s)	82, 228
EarI	CTCTTC	2 cut(s)	82, 228
FaiI	YATR	4 cut(s)	9, 95, 251, 420
FaqI	GGGAC	1 cut(s)	275
HgaI	GACGC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	82, 121, 215
Hpy188III	TCNNGA	1 cut(s)	23
Hpy99I	CGWCG	3 cut(s)	143, 349, 389
HpyCH4III	ACNGT	3 cut(s)	152, 345, 427
HpyCH4V	TGCA	4 cut(s)	171, 268, 275, 304
HpyF3I	CTNAG	4 cut(s)	99, 189, 222, 326
LpnPI	CCDG	1 cut(s)	278
LweI	GCATC	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	315, 329
MboII	GAAGA	5 cut(s)	69, 134, 158, 176, 245
MluCI	AATT	4 cut(s)	68, 246, 269, 389
MluI	ACGCGT	1 cut(s)	398
MseI	TTAA	1 cut(s)	339
MvnI	CGCG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	133
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	339
SetI	ASST	5 cut(s)	190, 202, 223, 267, 314
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	9 cut(s)	24, 35, 50, 119, 149, 269, 277, 321, 411
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	68, 246, 269, 389
SsiI	CCGC	1 cut(s)	394
SspI	AATATT	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	152, 345, 427
TasI	AATT	4 cut(s)	68, 246, 269, 389
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	80, 177
TspRI	CASTG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.