Rh5CG420300

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
57789494 .. 57792766
3273 bp
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UTR
Exon/CDS
Intron
Rh5CG420300.1

Sequence Viewer

Length: 228 bp
ATGATGCTCTCAACTTCGGCACCGGTATGCAAGGATATCCATGAGGTAACTTGGGTTGATGACAACAAGGCAACAATTGTAGAAGCTACATACACAGGACTAATGGGTCTAAAGAGGCAAAAGTCTGTGATCCTACTTGGTGGCCTTGCAAAGGATGTGACTGAGCAAGGAGAAACTATAGAAGCTAGAGTAACAAAAGCACTTATGGAATATGCATACATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.31

Weight (kDa)

5.21

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 19
AclWI GGATC 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 219
AgeI ACCGGT 1 cut(s) 22
AluBI AGCT 2 cut(s) 86, 185
AluI AGCT 2 cut(s) 86, 185
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 142
AsiGI ACCGGT 1 cut(s) 22
BanI GGYRCC 1 cut(s) 19
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 22
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 19
BshTI ACCGGT 1 cut(s) 22
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 151
BsnI GGCC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 129
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssMI GATC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 22
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 2 cut(s) 41, 220
CviJI RGCY 3 cut(s) 86, 144, 185
CviKI_1 RGCY 3 cut(s) 86, 144, 185
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 217
FaeI CATG 2 cut(s) 44, 223
FaiI YATR 8 cut(s) 28, 42, 91, 179, 206, 213, 217, 221
FatI CATG 2 cut(s) 40, 219
FokI GGATG 1 cut(s) 167
FspBI CTAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 23
Hin1II CATG 2 cut(s) 44, 223
HpaII CCGG 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 30, 149, 215
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 2 cut(s) 44, 223
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 2 cut(s) 36, 81
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 46, 157, 190
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MfeI CAATTG 1 cut(s) 75
MluCI AATT 1 cut(s) 75
MnlI CCTC 2 cut(s) 37, 108
Mph1103I ATGCAT 1 cut(s) 217
MslI CAYNNNNRTG 1 cut(s) 25
MspI CCGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 75
NdeII GATC 1 cut(s) 129
NlaIII CATG 2 cut(s) 44, 223
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PinAI ACCGGT 1 cut(s) 22
PscI ACATGT 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 25
Sau3AI GATC 1 cut(s) 129
SetI ASST 3 cut(s) 48, 88, 187
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 25
Sse9I AATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 186
TasI AATT 1 cut(s) 75
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 149
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.