Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002157.1

Orthogroup ID

OG0001095

Physical Location & Seq

Genomic Coordinates Reverse (-)

131994 .. 132524

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002157.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgcctaaaatactgcaaaaccatggtattagtcaagcaaaacatggtgatacatcacgcttcagcaaaggagattctcaatgcaagctagatcagagaaacttgtgcagtaatgatggcaaatgtccacacagtaggggttccactttacaggagagctcagaagcaacggtctatgcagaagattgcatacaactcaaaagtgattcagagttaatttcagttaacggaggagtggtaagcaaatcaactgatggaagcaaagaaagaaaaggcaagggaaaaggatcatcagaagatggtttcattacaacaaggaaacgcaaattttcagcaacaaatgatgtaaactcttcaaaaagaccaccagagagtggtaaaggaacagttcaattagcaggcggagaggatgttattaaaagaaaggctttagccgagacaacaaatattcatcattctccggcaaagatgatcactgggaaatggaagtgccctcagcttggacttgagcaatggattcacaagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.09

Weight (kDa)

9.4

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29790 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G43880 AT4G07526 AT4G07526 AT4G07526 AT4G16807
fragaria_vesca	FvH4_2g33151 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900
malus_domestica	MD06G1050900.v1.1
prunus_persica	Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1
pyrus_communis	pycom06g04320
rosa_chinensis	RchiOBHm_Chr1g0325401 RchiOBHm_Chr7g0204751
rosa_laevigata	RLG00000003436 RLG00000010189 RLG00000012666
rosa_multiflora	Rmu_sc0002157.1_g000033 Rmu_sc0003221.1_g000060
rosa_roxburghii	Rroxscaffold_3G00252850 Rroxscaffold_5G00333620
rosa_rugosa	Rorug03G0305000 Rorug03G0305400.1 Rorug07G0085800
rosa_samantha	Rh2CG177800 Rh3DG262600 Rh4AG008300 Rh4AG009100 Rh4AG009600 Rh4AG021000 Rh4BG006400 Rh4CG009000 Rh4CG010000 Rh4CG010100 Rh4DG007700 Rh5AG385100 Rh5CG420300 Rh6AG282900 Rh6AG404200 Rh6BG283700 Rh6CG285600 Rh6DG278700 Rh7AG215800 Rh7BG212900 Rh7CG229000 Rh7DG223400
rosa_wichuraiana	Rw4G000190 Rw4G000230 Rw7G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AciI	CCGC	1 cut(s)	402
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	374, 500
AgsI	TTSAA	2 cut(s)	357, 392
AluBI	AGCT	3 cut(s)	88, 159, 499
AluI	AGCT	3 cut(s)	88, 159, 499
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	161
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
Bbv12I	GWGCWC	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	495
BccI	CCATC	3 cut(s)	110, 248, 293
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 500
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	374, 500
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	2 cut(s)	174, 509
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	374, 500
BsmAI	GTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	161, 494
Bsp143I	GATC	3 cut(s)	91, 287, 471
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	173, 508
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	91, 287, 471
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	134, 172, 388
Bst6I	CTCTTC	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	86, 400
BstDEI	CTNAG	2 cut(s)	160, 495
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	3 cut(s)	94, 290, 474
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	91, 287, 471
BstSLI	GKGCMC	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	86, 400
CviAII	CATG	2 cut(s)	23, 44
CviJI	RGCY	5 cut(s)	88, 159, 428, 434, 499
CviKI_1	RGCY	5 cut(s)	88, 159, 428, 434, 499
DdeI	CTNAG	2 cut(s)	160, 495
DpnI	GATC	3 cut(s)	93, 289, 473
DpnII	GATC	3 cut(s)	91, 287, 471
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
EciI	GGCGGA	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	2 cut(s)	26, 47
FaiI	YATR	4 cut(s)	24, 45, 177, 191
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FatI	CATG	2 cut(s)	22, 43
FbaI	TGATCA	1 cut(s)	471
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	89
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	2 cut(s)	26, 47
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	74, 206, 517
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	3 cut(s)	128, 226, 349
Hpy188I	TCNGA	4 cut(s)	96, 163, 211, 295
Hpy8I	GTNNAC	3 cut(s)	128, 226, 349
HpyCH4III	ACNGT	3 cut(s)	134, 172, 388
HpyCH4V	TGCA	5 cut(s)	16, 84, 108, 179, 189
HpyF3I	CTNAG	2 cut(s)	160, 495
Hsp92II	CATG	2 cut(s)	26, 47
Ksp22I	TGATCA	1 cut(s)	471
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	91, 287, 471
LpnPI	CCDG	5 cut(s)	137, 381, 384, 462, 474
MaeI	CTAG	1 cut(s)	89
MalI	GATC	3 cut(s)	93, 289, 473
MboI	GATC	3 cut(s)	91, 287, 471
MboII	GAAGA	3 cut(s)	194, 308, 345
MhlI	GDGCHC	2 cut(s)	161, 494
MluCI	AATT	3 cut(s)	216, 326, 392
MnlI	CCTC	3 cut(s)	224, 400, 504
MseI	TTAA	3 cut(s)	215, 225, 417
MspI	CCGG	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	91, 287, 471
NlaIII	CATG	2 cut(s)	26, 47
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	74, 206, 517
PflMI	CCANNNNNTGG	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	215, 225, 417
Sau3AI	GATC	3 cut(s)	91, 287, 471
SduI	GDGCHC	2 cut(s)	161, 494
SetI	ASST	3 cut(s)	90, 161, 501
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	216, 326, 392
SsiI	CCGC	1 cut(s)	402
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	3 cut(s)	134, 172, 388
TasI	AATT	3 cut(s)	216, 326, 392
TfiI	GAWTC	3 cut(s)	74, 206, 517
Tru1I	TTAA	3 cut(s)	215, 225, 417
Tru9I	TTAA	3 cut(s)	215, 225, 417
TscAI	CASTG	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	295, 440
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	481
Van91I	CCANNNNNTGG	1 cut(s)	374
XapI	RAATTY	1 cut(s)	326
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.