Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001095

Physical Location & Seq

Genomic Coordinates Reverse (-)

11718739 .. 11721597

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19900.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATTTCGATTTTTTTCGCAATGAGTTTGGTACCGGCGAGAGTGAAAGAGGAAAAGATGAAGGGAATTCATGTGGGTTTAGGGAAATTGGAAATAAAGTTGGAGTCTTCGTTCATGAGAAGGCAGATGGGGTTGTCAAATGTGGCAGGTCTTCACAAGACCAATGTTTAAGTAAGATTTCAGGTTCTTCGGAGTCACCGTCGTCCCTTTCAGAGCCTACGGACATCAAAAATTGGTTTTCAAGCTATGTGTACGAGTCTCCTTCATTGGGTACTACTGATGGTTTTGGAGATTCTCTTGCCAAGCAAAGTAAATGCGAGAAGGATAGGTTTTTGGTTGAAAACAGTAAGAGAGAAAATGAAGAGGAATTGAGGAATTCTAGTGTAAAGAGGAGTATTAGTAGAGAGGTTGTGGGTGAGAAGGAACAGTCAGGAGGGCTTTCGAATTGTGACAGCTCTTGGAGAGTTACTAAGCAGGCAAGGCAATCTATACCTGAGGTACTTTTTTGTGCATCTCTTTTCCTTACAGGTTCCAGGTCATTTGGATTCCTCTTCACACTTGTCAAGTTTGTAACAACTACTCATGCAGCTTTTCTTTCCCAAATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.45

Weight (kDa)

5.83

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29790 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G43880 AT4G07526 AT4G07526 AT4G07526 AT4G16807
fragaria_vesca	FvH4_2g33151 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900
malus_domestica	MD06G1050900.v1.1
prunus_persica	Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1
pyrus_communis	pycom06g04320
rosa_chinensis	RchiOBHm_Chr1g0325401 RchiOBHm_Chr7g0204751
rosa_laevigata	RLG00000003436 RLG00000010189 RLG00000012666
rosa_multiflora	Rmu_sc0002157.1_g000033 Rmu_sc0003221.1_g000060
rosa_roxburghii	Rroxscaffold_3G00252850 Rroxscaffold_5G00333620
rosa_rugosa	Rorug03G0305000 Rorug03G0305400.1 Rorug07G0085800
rosa_samantha	Rh2CG177800 Rh3DG262600 Rh4AG008300 Rh4AG009100 Rh4AG009600 Rh4AG021000 Rh4BG006400 Rh4CG009000 Rh4CG010000 Rh4CG010100 Rh4DG007700 Rh5AG385100 Rh5CG420300 Rh6AG282900 Rh6AG404200 Rh6BG283700 Rh6CG285600 Rh6DG278700 Rh7AG215800 Rh7BG212900 Rh7CG229000 Rh7DG223400
rosa_wichuraiana	Rw4G000190 Rw4G000230 Rw7G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	138
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	32
AcsI	RAATTY	3 cut(s)	4, 67, 376
AfaI	GTAC	4 cut(s)	34, 254, 274, 501
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	243, 341
AjnI	CCWGG	1 cut(s)	533
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	3 cut(s)	246, 456, 590
AluI	AGCT	3 cut(s)	246, 456, 590
Alw26I	GTCTC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	3 cut(s)	4, 67, 376
Asp718I	GGTACC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	189, 428
AsuII	TTCGAA	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	100, 144
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	2 cut(s)	122, 275
BciT130I	CCWGG	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
Bme1390I	CCNGG	1 cut(s)	535
BmiI	GGNNCC	2 cut(s)	34, 532
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	521
BpiI	GAAGAC	2 cut(s)	100, 144
Bpu14I	TTCGAA	1 cut(s)	443
BsaXI	ACNNNNNCTCC	6 cut(s)	96, 126, 185, 215, 385, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	599
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	190
Bsp119I	TTCGAA	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	34, 532
BspMI	ACCTGC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	201, 347, 429
Bst6I	CTCTTC	2 cut(s)	357, 557
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	471, 495
BstMAI	GTCTC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	2 cut(s)	100, 144
Bsu36I	CCTNAGG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	477
CciI	TCATGA	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	35
Csp6I	GTAC	4 cut(s)	33, 253, 273, 500
CviAII	CATG	3 cut(s)	72, 116, 584
CviJI	RGCY	5 cut(s)	217, 246, 439, 456, 590
CviKI_1	RGCY	5 cut(s)	217, 246, 439, 456, 590
CviQI	GTAC	4 cut(s)	33, 253, 273, 500
DdeI	CTNAG	2 cut(s)	471, 495
Eam1104I	CTCTTC	2 cut(s)	357, 557
EarI	CTCTTC	2 cut(s)	357, 557
Eco81I	CCTNAGG	1 cut(s)	495
EcoRI	GAATTC	2 cut(s)	67, 376
EcoRII	CCWGG	1 cut(s)	533
FaeI	CATG	3 cut(s)	75, 119, 587
FaiI	YATR	6 cut(s)	73, 117, 249, 491, 585, 610
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	3 cut(s)	71, 115, 583
Fnu4HI	GCNGC	1 cut(s)	588
Fsp4HI	GCNGC	1 cut(s)	588
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	1 cut(s)	588
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	3 cut(s)	75, 119, 587
HinfI	GANTC	5 cut(s)	105, 194, 257, 293, 546
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	189, 428
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	193, 214
Hpy188III	TCNNGA	2 cut(s)	116, 432
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	5 cut(s)	56, 115, 273, 316, 415
HpyCH4III	ACNGT	3 cut(s)	201, 347, 429
HpyCH4V	TGCA	2 cut(s)	512, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	2 cut(s)	471, 495
Hsp92II	CATG	3 cut(s)	75, 119, 587
KpnI	GGTACC	1 cut(s)	36
LpnPI	CCDG	9 cut(s)	49, 133, 168, 417, 461, 507, 513, 520, 547
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	4 cut(s)	195, 449, 466, 571
MboII	GAAGA	5 cut(s)	100, 144, 180, 374, 544
MluCI	AATT	8 cut(s)	4, 67, 87, 232, 368, 376, 445, 603
MlyI	GAGTC	3 cut(s)	114, 203, 266
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	8 cut(s)	44, 358, 366, 384, 400, 428, 490, 560
MseI	TTAA	1 cut(s)	170
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	1 cut(s)	481
NlaIII	CATG	3 cut(s)	75, 119, 587
NlaIV	GGNNCC	2 cut(s)	34, 532
NmuCI	GTSAC	2 cut(s)	195, 449
NspV	TTCGAA	1 cut(s)	443
PagI	TCATGA	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	293, 546
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	3 cut(s)	113, 202, 265
PpsI	GAGTC	3 cut(s)	113, 202, 265
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	34, 532
RsaI	GTAC	4 cut(s)	34, 254, 274, 501
RsaNI	GTAC	4 cut(s)	33, 253, 273, 500
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	588
SchI	GAGTC	3 cut(s)	114, 203, 266
ScrFI	CCNGG	1 cut(s)	535
SfaNI	GCATC	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	443
Sse9I	AATT	8 cut(s)	4, 67, 87, 232, 368, 376, 445, 603
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	533
TaaI	ACNGT	3 cut(s)	201, 347, 429
TaqI	TCGA	2 cut(s)	9, 443
TasI	AATT	8 cut(s)	4, 67, 87, 232, 368, 376, 445, 603
TfiI	GAWTC	2 cut(s)	293, 546
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	195, 449
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	2 cut(s)	195, 449
TspDTI	ATGAA	6 cut(s)	17, 60, 75, 104, 255, 375
TspGWI	ACGGA	1 cut(s)	236
XapI	RAATTY	3 cut(s)	4, 67, 376
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.