Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001095

Physical Location & Seq

Genomic Coordinates Reverse (-)

1017121 .. 1019528

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGGTTGTCAAATGTGGCAGCTCTTCACAAAACCAATGCTCAAGTTAAGATTTCAGGTTCTTCGGAGTCACTTTCGTCCCTTTCAGAGCCTACGCATATCAAAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCATTGGATACAACTGATGGTTTTGGCGATTCTTTTTGCAAAAAAAGTAAATGCGAGAAGGCTAGGTTTTTGGTTGAAAACAACAAGAGAGAAAACGAAGAGGATTTGAGGAATTTTAGTATAAAGAGCAGTGTCAGTAAAGAGGTTGTGGGTGAGAAGAAACGGTCAGGAGGGCTTGCAAATTGTGACAGCTCTTCGAGAGATACTAAGCAGACAAGGCAGACTCTAAGTGAGGCTCCAGGTCCTGTGGTATCACTTTTGCTCCTTTCAGAATGTAAATGTAAGGATGGATTCATGGTTGAAAATAACAAGAGAGATAATGAAGAGGATTTGGGGGATTTTAGAAGAAAGAGTTGTGTTGGTGAAGAGGTTGTGGGAGAGAAGAAACAGTCAGTATGGCTTGCAATATGTGACAGCTCTTGGAGAGATACCAAGCATGGTAGCAGCCTGTTCCTGGTCCTTTGGATTCCTCTTCACACTAGTCAGAGCCAACTGGCATCAGAAACTGGTTCTCAAGCTATGTTTATGAGTCTCCGTCTTTGGATACAGCTGATGGTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.12

Weight (kDa)

7.57

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29790 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G43880 AT4G07526 AT4G07526 AT4G07526 AT4G16807
fragaria_vesca	FvH4_2g33151 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900
malus_domestica	MD06G1050900.v1.1
prunus_persica	Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1
pyrus_communis	pycom06g04320
rosa_chinensis	RchiOBHm_Chr1g0325401 RchiOBHm_Chr7g0204751
rosa_laevigata	RLG00000003436 RLG00000010189 RLG00000012666
rosa_multiflora	Rmu_sc0002157.1_g000033 Rmu_sc0003221.1_g000060
rosa_roxburghii	Rroxscaffold_3G00252850 Rroxscaffold_5G00333620
rosa_rugosa	Rorug03G0305000 Rorug03G0305400.1 Rorug07G0085800
rosa_samantha	Rh2CG177800 Rh3DG262600 Rh4AG008300 Rh4AG009100 Rh4AG009600 Rh4AG021000 Rh4BG006400 Rh4CG009000 Rh4CG010000 Rh4CG010100 Rh4DG007700 Rh5AG385100 Rh5CG420300 Rh6AG282900 Rh6AG404200 Rh6BG283700 Rh6CG285600 Rh6DG278700 Rh7AG215800 Rh7BG212900 Rh7CG229000 Rh7DG223400
rosa_wichuraiana	Rw4G000190 Rw4G000230 Rw7G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	2 cut(s)	215, 440
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	2 cut(s)	376, 591
AluBI	AGCT	6 cut(s)	23, 120, 330, 555, 656, 688
AluI	AGCT	6 cut(s)	23, 120, 330, 555, 656, 688
Alw26I	GTCTC	2 cut(s)	138, 674
AlwNI	CAGNNNCTG	2 cut(s)	383, 644
ApeKI	GCWGC	2 cut(s)	20, 582
ApoI	RAATTY	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	380, 595
AsuHPI	GGTGA	2 cut(s)	302, 512
AvaII	GGWCC	2 cut(s)	380, 595
BbvI	GCAGC	2 cut(s)	32, 594
BccI	CCATC	3 cut(s)	149, 419, 685
BciT130I	CCWGG	2 cut(s)	378, 593
BciVI	GTATCC	2 cut(s)	139, 675
BcoDI	GTCTC	2 cut(s)	138, 674
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	2 cut(s)	201, 618
BfuI	GTATCC	2 cut(s)	139, 675
BisI	GCNGC	2 cut(s)	21, 583
BlsI	GCNGC	2 cut(s)	22, 584
Bme1390I	CCNGG	2 cut(s)	378, 593
Bme18I	GGWCC	2 cut(s)	380, 595
BmgT120I	GGNCC	2 cut(s)	380, 595
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	378, 593
BmsI	GCATC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	3 cut(s)	27, 100, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse1I	ACTGG	3 cut(s)	113, 636, 649
BseBI	CCWGG	2 cut(s)	378, 593
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseNI	ACTGG	3 cut(s)	113, 636, 649
BseXI	GCAGC	2 cut(s)	32, 594
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmAI	GTCTC	2 cut(s)	138, 674
BsmFI	GGGAC	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	375
BspQI	GCTCTTC	2 cut(s)	30, 337
BsrI	ACTGG	3 cut(s)	113, 636, 649
Bst2UI	CCWGG	2 cut(s)	378, 593
Bst4CI	ACNGT	2 cut(s)	303, 528
Bst6I	CTCTTC	6 cut(s)	30, 231, 337, 456, 498, 615
BstC8I	GCNNGC	2 cut(s)	315, 540
BstDEI	CTNAG	2 cut(s)	345, 365
BstF5I	GGATG	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	138, 674
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	2 cut(s)	378, 593
BstSCI	CCNGG	2 cut(s)	376, 591
BstV1I	GCAGC	2 cut(s)	32, 594
BsuI	GTATCC	2 cut(s)	139, 675
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	315, 540
CaiI	CAGNNNCTG	2 cut(s)	383, 644
Cfr13I	GGNCC	2 cut(s)	380, 595
CviAII	CATG	2 cut(s)	433, 575
DdeI	CTNAG	2 cut(s)	345, 365
Eam1104I	CTCTTC	6 cut(s)	30, 231, 337, 456, 498, 615
EarI	CTCTTC	6 cut(s)	30, 231, 337, 456, 498, 615
Eco47I	GGWCC	2 cut(s)	380, 595
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	376, 591
FaeI	CATG	2 cut(s)	436, 578
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	432, 574
Fnu4HI	GCNGC	2 cut(s)	21, 583
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	2 cut(s)	21, 583
FspBI	CTAG	2 cut(s)	201, 618
GluI	GCNGC	2 cut(s)	21, 583
GsuI	CTGGAG	1 cut(s)	360
Hin1II	CATG	2 cut(s)	436, 578
HinfI	GANTC	7 cut(s)	68, 131, 167, 361, 429, 604, 667
HphI	GGTGA	2 cut(s)	302, 512
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	5 cut(s)	67, 88, 409, 624, 640
Hpy188III	TCNNGA	2 cut(s)	306, 336
Hpy8I	GTNNAC	1 cut(s)	697
HpyAV	CCTTC	2 cut(s)	147, 190
HpyCH4III	ACNGT	2 cut(s)	303, 528
HpyCH4V	TGCA	3 cut(s)	177, 317, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	345, 365
Hsp92II	CATG	2 cut(s)	436, 578
LguI	GCTCTTC	2 cut(s)	30, 337
LmnI	GCTCC	2 cut(s)	379, 405
Lsp1109I	GCAGC	2 cut(s)	32, 594
LweI	GCATC	1 cut(s)	644
MaeI	CTAG	2 cut(s)	201, 618
MaeIII	GTNAC	3 cut(s)	69, 323, 548
MluCI	AATT	2 cut(s)	250, 319
MlyI	GAGTC	4 cut(s)	77, 140, 355, 676
MnlI	CCTC	8 cut(s)	232, 240, 274, 302, 364, 457, 499, 618
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	688
MspR9I	CCNGG	2 cut(s)	378, 593
MvaI	CCWGG	2 cut(s)	378, 593
MwoI	GCNNNNNNNGC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	436, 578
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	3 cut(s)	69, 323, 548
PciSI	GCTCTTC	2 cut(s)	30, 337
PfeI	GAWTC	3 cut(s)	167, 429, 604
PkrI	GCNGC	2 cut(s)	22, 584
PleI	GAGTC	4 cut(s)	76, 139, 355, 675
PpsI	GAGTC	4 cut(s)	76, 139, 355, 675
PpuMI	RGGWCCY	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	376, 591
PspGI	CCWGG	2 cut(s)	376, 591
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	2 cut(s)	380, 595
PspPPI	RGGWCCY	1 cut(s)	380
PstNI	CAGNNNCTG	2 cut(s)	383, 644
PvuII	CAGCTG	1 cut(s)	688
SapI	GCTCTTC	2 cut(s)	30, 337
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	21, 583
Sau96I	GGNCC	2 cut(s)	380, 595
SchI	GAGTC	4 cut(s)	77, 140, 355, 676
ScrFI	CCNGG	2 cut(s)	378, 593
SfaNI	GCATC	1 cut(s)	644
SinI	GGWCC	2 cut(s)	380, 595
SmlI	CTYRAG	3 cut(s)	42, 115, 651
SmoI	CTYRAG	3 cut(s)	42, 115, 651
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	2 cut(s)	250, 319
SspMI	CTAG	2 cut(s)	201, 618
StyD4I	CCNGG	2 cut(s)	376, 591
TaaI	ACNGT	2 cut(s)	303, 528
TaqI	TCGA	1 cut(s)	335
TasI	AATT	2 cut(s)	250, 319
TfiI	GAWTC	3 cut(s)	167, 429, 604
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	3 cut(s)	69, 323, 548
TseI	GCWGC	2 cut(s)	20, 582
Tsp45I	GTSAC	3 cut(s)	69, 323, 548
TspDTI	ATGAA	3 cut(s)	129, 421, 474
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	380, 595
XapI	RAATTY	1 cut(s)	250
XspI	CTAG	2 cut(s)	201, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.