RLG00000010189

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001095
Physical Location & Seq
Forward (+)
63987936 .. 63990584
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010189

Sequence Viewer

Length: 1215 bp
ATGTATGAGTCTCCTTCATTGGATACAACTGATGGTTTTGGCAATTCTCTTTGCAAAGAAAGTAAATGCGAGAGGGCTAGGTTTTTGGTTGGAAACAACAAGAGAGAAAATGAAGAGGATCTGAGGAATTTTAGTATAAAGAGCAGTGTCAGTAAAGAGGTTGTGGGTGAGAAGAAACGGTCTGGAGGGCTTGCAAATTGTGACGCTCTTCGAGAGATACTAAGCAGACAAGGCAGACTGCAAGCTCCAGGTCCTGTGGAATCACCTTTGCTCCTTTTAGAACCTATTCACATCAGAAACTGGTTCTCAAGCTATGTGTATTATACATGTGAGAAGAATGGATTTATGGTTGAAAATAGCAAGAGAGATAATGAAGAGGATTTGGGGGATTTTAGAAGAAAGATTCGTGTTAGTGAAGAGGTTGCAGGAGAGAAGAAACAGTCAGTAGGGCTTGCAACATGTGACAGCTCCTGGAGAGATTCCAAGCATGGTAGGCAGCCTGTGAGTAAGGTTCCAGGTTCTTTGGATTCCTCTTTACACTTGTCAAAGCCTACTGACATCAGAAACTGGTTCTCTAGCTATGTGTATGAGCCTCTGTCTTTGAATACAGCTGATGCTTTTGGAGATTTTGTTTGTAGAGATAGAATAAATGAGAAGGATGAGGTTTTGGTTGAACCCAGCAACAGAGAAGAGGGAGAGGGTTTGGAGGGATTTAGTAAAAAGGAAAGTGATAGTGAAGAGGTTGATGTTGAGAAGGTACAGTCAGAAGAGTTCGGAAAATATAACACCTCCTGCAGACAGTGTGTGCAAAACCATGGTATTAGTCAAGCAAAACATGGTGATACATCAAGCTTCAGCAAAGGAGATTCTCAATGCAAGCTAGATCAGAGAAACTTGTGCAGTAATGATGGCAAATGTCCACAGAGTAGGGATTCCACTTTACAGGAGAGCTCAGAAGCAATGGTCTATGCAGAAGGTTGCATACAACTCAAAAGTGATTCAGAGTTAATTTCAGTTAACGGAGGAGTGTTAAGCAAATCAACTGATGGAAGCAAAGAAAGAAAAGGCAAGGGAAAAGGATCATCAGAAGATGGTTTCATTACAACAAGGAAACGCAAATTTGCAGCAACAAATGATGTAAACTCTTCAAAAAGACCACCAGAGAGTGGTAAAGGAACAGTTGCATTAGCAAGCGGAAAGGATGTTGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

44.7

Weight (kDa)

5.95

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1166
AciI CCGC 1 cut(s) 1194
AclWI GGATC 2 cut(s) 126, 1087
AcsI RAATTY 2 cut(s) 127, 1118
AcuI CTGAAG 1 cut(s) 838
AfaI GTAC 1 cut(s) 759
AfiI CCNNNNNNNGG 1 cut(s) 1166
AflIII ACRYGT 2 cut(s) 326, 458
AgsI TTSAA 4 cut(s) 353, 604, 674, 1149
AjnI CCWGG 3 cut(s) 247, 470, 514
AluBI AGCT 8 cut(s) 245, 312, 468, 579, 611, 852, 880, 951
AluI AGCT 8 cut(s) 245, 312, 468, 579, 611, 852, 880, 951
Alw21I GWGCWC 1 cut(s) 953
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 126, 1087
AlwNI CAGNNNCTG 4 cut(s) 254, 300, 471, 567
ApeKI GCWGC 2 cut(s) 496, 1124
ApoI RAATTY 2 cut(s) 127, 1118
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 179, 255, 851
AvaII GGWCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 953
BarI GAAGNNNNNNTAC 2 cut(s) 966, 998
Bbv12I GWGCWC 1 cut(s) 953
BbvI GCAGC 2 cut(s) 508, 1136
BccI CCATC 4 cut(s) 26, 902, 1040, 1085
BciT130I CCWGG 3 cut(s) 249, 472, 516
BciVI GTATCC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 3 cut(s) 78, 576, 881
BfmI CTRYAG 1 cut(s) 793
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 2 cut(s) 497, 1125
BlsI GCNGC 2 cut(s) 498, 1126
Bme1390I CCNGG 3 cut(s) 249, 472, 516
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 3 cut(s) 249, 472, 516
BmsI GCATC 1 cut(s) 604
BpmI CTGGAG 3 cut(s) 204, 231, 493
BpuEI CTTGAG 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 814
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 615, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 1166
Bse1I ACTGG 2 cut(s) 305, 572
Bse3DI GCAATG 1 cut(s) 966
BseBI CCWGG 3 cut(s) 249, 472, 516
BseDI CCNNGG 1 cut(s) 814
BseGI GGATG 2 cut(s) 664, 1207
BseLI CCNNNNNNNGG 1 cut(s) 1166
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 2 cut(s) 113, 966
BseNI ACTGG 2 cut(s) 305, 572
BseRI GAGGAG 1 cut(s) 1038
BseXI GCAGC 2 cut(s) 508, 1136
BseYI CCCAGC 1 cut(s) 677
BsgI GTGCAG 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 953
BslI CCNNNNNNNGG 1 cut(s) 1166
BsmAI GTCTC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 953
Bsp143I GATC 3 cut(s) 118, 883, 1079
Bsp19I CCATGG 1 cut(s) 814
BspACI CCGC 1 cut(s) 1194
BspCNI CTCAG 2 cut(s) 114, 965
BspLI GGNNCC 1 cut(s) 513
BspMAI CTGCAG 1 cut(s) 797
BspPI GGATC 2 cut(s) 126, 1087
BspQI GCTCTTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 966
BsrI ACTGG 2 cut(s) 305, 572
BssECI CCNNGG 1 cut(s) 814
BssMI GATC 3 cut(s) 118, 883, 1079
BssT1I CCWWGG 1 cut(s) 814
Bst2UI CCWGG 3 cut(s) 249, 472, 516
Bst4CI ACNGT 5 cut(s) 180, 441, 762, 801, 1180
Bst6I CTCTTC 8 cut(s) 108, 213, 369, 411, 684, 732, 762, 1150
BstC8I GCNNGC 5 cut(s) 192, 243, 453, 878, 1192
BstDEI CTNAG 3 cut(s) 122, 221, 952
BstDSI CCRYGG 1 cut(s) 814
BstF5I GGATG 2 cut(s) 664, 1207
BstKTI GATC 3 cut(s) 121, 886, 1082
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 3 cut(s) 118, 883, 1079
BstMWI GCNNNNNNNGC 2 cut(s) 231, 493
BstNI CCWGG 3 cut(s) 249, 472, 516
BstNSI RCATGY 2 cut(s) 330, 462
BstSCI CCNGG 3 cut(s) 247, 470, 514
BstSFI CTRYAG 1 cut(s) 793
BstV1I GCAGC 2 cut(s) 508, 1136
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 814
BtsCI GGATG 2 cut(s) 664, 1207
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 151, 806
Cac8I GCNNGC 5 cut(s) 192, 243, 453, 878, 1192
CaiI CAGNNNCTG 4 cut(s) 254, 300, 471, 567
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 758
CviAII CATG 5 cut(s) 327, 459, 488, 815, 836
CviQI GTAC 1 cut(s) 758
DdeI CTNAG 3 cut(s) 122, 221, 952
DpnI GATC 3 cut(s) 120, 885, 1081
DpnII GATC 3 cut(s) 118, 883, 1079
Eam1104I CTCTTC 8 cut(s) 108, 213, 369, 411, 684, 732, 762, 1150
EarI CTCTTC 8 cut(s) 108, 213, 369, 411, 684, 732, 762, 1150
Ecl136II GAGCTC 1 cut(s) 951
Eco130I CCWWGG 1 cut(s) 814
Eco24I GRGCYC 1 cut(s) 953
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 951
Eco57I CTGAAG 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 247, 470, 514
EcoT14I CCWWGG 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 953
ErhI CCWWGG 1 cut(s) 814
FaeI CATG 5 cut(s) 330, 462, 491, 818, 839
FatI CATG 5 cut(s) 326, 458, 487, 814, 835
Fnu4HI GCNGC 2 cut(s) 497, 1125
FokI GGATG 1 cut(s) 671
FriOI GRGCYC 1 cut(s) 953
Fsp4HI GCNGC 2 cut(s) 497, 1125
FspBI CTAG 3 cut(s) 78, 576, 881
GluI GCNGC 2 cut(s) 497, 1125
GsaI CCCAGC 1 cut(s) 681
GsuI CTGGAG 3 cut(s) 204, 231, 493
HgaI GACGC 1 cut(s) 212
Hin1II CATG 5 cut(s) 330, 462, 491, 818, 839
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 850
HinfI GANTC 8 cut(s) 8, 260, 403, 479, 527, 866, 932, 998
HpaI GTTAAC 1 cut(s) 1018
HphI GGTGA 3 cut(s) 179, 255, 851
Hpy166II GTNNAC 3 cut(s) 920, 1018, 1141
Hpy188I TCNGA 9 cut(s) 123, 296, 563, 766, 776, 888, 955, 1003, 1087
Hpy188III TCNNGA 2 cut(s) 183, 212
Hpy8I GTNNAC 3 cut(s) 920, 1018, 1141
HpyAV CCTTC 4 cut(s) 24, 649, 748, 968
HpyCH4III ACNGT 5 cut(s) 180, 441, 762, 801, 1180
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 493
HpyF3I CTNAG 3 cut(s) 122, 221, 952
Hsp92II CATG 5 cut(s) 330, 462, 491, 818, 839
KspAI GTTAAC 1 cut(s) 1018
Kzo9I GATC 3 cut(s) 118, 883, 1079
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 3 cut(s) 250, 276, 473
Lsp1109I GCAGC 2 cut(s) 508, 1136
LweI GCATC 1 cut(s) 604
MaeI CTAG 3 cut(s) 78, 576, 881
MaeIII GTNAC 2 cut(s) 200, 461
MalI GATC 3 cut(s) 120, 885, 1081
MboI GATC 3 cut(s) 118, 883, 1079
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 953
MluCI AATT 5 cut(s) 43, 127, 196, 1008, 1118
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 4 cut(s) 1007, 1017, 1031, 1209
MspA1I CMGCKG 1 cut(s) 611
MspR9I CCNGG 3 cut(s) 249, 472, 516
MvaI CCWGG 3 cut(s) 249, 472, 516
MwoI GCNNNNNNNGC 2 cut(s) 231, 493
NcoI CCATGG 1 cut(s) 814
NdeII GATC 3 cut(s) 118, 883, 1079
NlaIII CATG 5 cut(s) 330, 462, 491, 818, 839
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 2 cut(s) 200, 461
NspI RCATGY 2 cut(s) 330, 462
PciI ACATGT 2 cut(s) 326, 458
PciSI GCTCTTC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 7 cut(s) 260, 403, 479, 527, 866, 932, 998
PflMI CCANNNNNTGG 1 cut(s) 1166
PfoI TCCNGGA 1 cut(s) 470
PkrI GCNGC 2 cut(s) 498, 1126
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 251
PscI ACATGT 2 cut(s) 326, 458
Psp124BI GAGCTC 1 cut(s) 953
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 3 cut(s) 247, 470, 514
PspFI CCCAGC 1 cut(s) 677
PspGI CCWGG 3 cut(s) 247, 470, 514
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 251
PspPPI RGGWCCY 1 cut(s) 251
PstI CTGCAG 1 cut(s) 797
PstNI CAGNNNCTG 4 cut(s) 254, 300, 471, 567
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 1 cut(s) 759
RsaNI GTAC 1 cut(s) 758
SacI GAGCTC 1 cut(s) 953
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 4 cut(s) 1007, 1017, 1031, 1209
SatI GCNGC 2 cut(s) 497, 1125
Sau3AI GATC 3 cut(s) 118, 883, 1079
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 3 cut(s) 249, 472, 516
SduI GDGCHC 1 cut(s) 953
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 793
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 5 cut(s) 43, 127, 196, 1008, 1118
SsiI CCGC 1 cut(s) 1194
SspMI CTAG 3 cut(s) 78, 576, 881
SstI GAGCTC 1 cut(s) 953
StyD4I CCNGG 3 cut(s) 247, 470, 514
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 5 cut(s) 180, 441, 762, 801, 1180
TaqI TCGA 1 cut(s) 211
TasI AATT 5 cut(s) 43, 127, 196, 1008, 1118
TfiI GAWTC 7 cut(s) 260, 403, 479, 527, 866, 932, 998
Tru1I TTAA 4 cut(s) 1007, 1017, 1031, 1209
Tru9I TTAA 4 cut(s) 1007, 1017, 1031, 1209
TscAI CASTG 2 cut(s) 151, 806
TseFI GTSAC 2 cut(s) 200, 461
TseI GCWGC 2 cut(s) 496, 1124
Tsp45I GTSAC 2 cut(s) 200, 461
TspDTI ATGAA 4 cut(s) 6, 126, 387, 1087
TspGWI ACGGA 1 cut(s) 1035
TspRI CASTG 2 cut(s) 151, 806
Van91I CCANNNNNTGG 1 cut(s) 1166
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 127, 1118
XceI RCATGY 2 cut(s) 330, 462
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 3 cut(s) 78, 576, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.