Rh6AG282900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001095
Physical Location & Seq
Reverse (-)
47873317 .. 47874868
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG282900.1

Sequence Viewer

Length: 216 bp
ATGCTCAATCACTCTCTCCAGGCGGTAGTTAGCTCCGGTGGTCCAAGAGCTCTTGATAAAGGTTTGTGGTTACGGGACGACTTCATCCTCAAATCCTCCGCTGCAATCCCCAGAAATTCGATCCCTGCTGATCTGATTCCTTTGCTGGATTCGATCCCTGCTCAATTGGGTGCTTGCTTATGTCTCAAGACTCATTGGGGACCTTGGCATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.71

Weight (kDa)

6.81

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 99
AclWI GGATC 2 cut(s) 115, 148
AcsI RAATTY 1 cut(s) 115
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 2 cut(s) 33, 50
AluI AGCT 2 cut(s) 33, 50
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 2 cut(s) 115, 148
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 41, 200
AvaII GGWCC 2 cut(s) 41, 200
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 188
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 2 cut(s) 41, 200
BmgT120I GGNCC 2 cut(s) 41, 200
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 35
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 120, 130, 153
BspACI CCGC 2 cut(s) 23, 99
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 2 cut(s) 115, 148
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 3 cut(s) 120, 130, 153
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 175
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 3 cut(s) 123, 133, 156
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 120, 130, 153
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 41, 200
CviAII CATG 1 cut(s) 209
CviJI RGCY 2 cut(s) 33, 50
CviKI_1 RGCY 2 cut(s) 33, 50
DpnI GATC 3 cut(s) 122, 132, 155
DpnII GATC 3 cut(s) 120, 130, 153
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 41, 200
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 212
FaiI YATR 2 cut(s) 181, 210
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
HapII CCGG 1 cut(s) 36
Hin1II CATG 1 cut(s) 212
HinfI GANTC 3 cut(s) 136, 149, 190
HpaII CCGG 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 53, 187
HpyCH4V TGCA 1 cut(s) 104
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 3 cut(s) 120, 130, 153
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 7 cut(s) 5, 32, 49, 124, 131, 138, 171
Lsp1109I GCAGC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 69
MalI GATC 3 cut(s) 122, 132, 155
MboI GATC 3 cut(s) 120, 130, 153
MfeI CAATTG 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 115, 164
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 2 cut(s) 98, 106
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 20
NdeII GATC 3 cut(s) 120, 130, 153
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 136, 149
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 2 cut(s) 41, 200
PspPPI RGGWCCY 1 cut(s) 200
SacI GAGCTC 1 cut(s) 52
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 120, 130, 153
Sau96I GGNCC 2 cut(s) 41, 200
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 52
SetI ASST 4 cut(s) 35, 52, 64, 205
SinI GGWCC 2 cut(s) 41, 200
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 115, 164
SsiI CCGC 2 cut(s) 23, 99
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 203
TaqI TCGA 2 cut(s) 119, 152
TasI AATT 2 cut(s) 115, 164
TfiI GAWTC 2 cut(s) 136, 149
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 41, 200
XapI RAATTY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.