Rh6DG278700

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
47268446 .. 47275427
6982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG278700.1

Sequence Viewer

Length: 438 bp
ATGGAAAATGGAAATAAAGATGAAGTCTTTGTTCATAAGAAGCAGAACTCAGATGAGGTTGTCAAAAGTGTATGCAAGGATATCCATGGGGTAACTCAGGTTGATGACAACAAGGCAATAAATGTAGAAGCTACATACACAGGACTAATGGGTCTAAAGAGGCAAAAGTCTGTGATCCTACTTGGTGGCCTTGCAAAGGATGTGACTGAGCAAGGAGAAACTGTAAAAGTTAGAGTAACAAAAGCACTTATGGAATATGCATACATTTTCCCAAATCCACAAAATTCTGAGGACGACTTCATCCTCAAATCCTCCGCTTCAATCCCCAGAAATTCGATCCCTGCTGATCTGATTCCTTTGCTGGATTCGATTCGGTTCGATCCCTGCTCAATTGGGTGCTTGCTTATGTCTCAAGACTCATTGGGGACCTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

15.89

Weight (kDa)

5.14

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 150
AciI CCGC 1 cut(s) 315
AclWI GGATC 3 cut(s) 169, 331, 374
AcsI RAATTY 2 cut(s) 283, 331
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 321
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 3 cut(s) 169, 331, 374
AoxI GGCC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 283, 331
AspS9I GGNCC 1 cut(s) 426
AvaII GGWCC 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 85, 429
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 85, 429
BseGI GGATG 2 cut(s) 205, 300
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 4 cut(s) 63, 110, 198, 279
BshFI GGCC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 414
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 4 cut(s) 174, 336, 346, 379
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 4 cut(s) 62, 109, 199, 280
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 3 cut(s) 169, 331, 374
BssECI CCNNGG 2 cut(s) 85, 429
BssMI GATC 4 cut(s) 174, 336, 346, 379
BssT1I CCWWGG 2 cut(s) 85, 429
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 4 cut(s) 49, 96, 207, 288
BstDSI CCRYGG 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 205, 300
BstKTI GATC 4 cut(s) 177, 339, 349, 382
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 4 cut(s) 174, 336, 346, 379
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 205, 300
Cac8I GCNNGC 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 426
CviAII CATG 2 cut(s) 86, 435
CviJI RGCY 2 cut(s) 131, 189
CviKI_1 RGCY 2 cut(s) 131, 189
DdeI CTNAG 4 cut(s) 49, 96, 207, 288
DpnI GATC 4 cut(s) 176, 338, 348, 381
DpnII GATC 4 cut(s) 174, 336, 346, 379
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 85, 429
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 426
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 85, 429
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 2 cut(s) 85, 429
FaeI CATG 2 cut(s) 89, 438
FaiI YATR 9 cut(s) 36, 73, 87, 136, 251, 258, 262, 407, 436
FatI CATG 2 cut(s) 85, 434
FokI GGATG 2 cut(s) 212, 287
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 2 cut(s) 89, 438
HinfI GANTC 4 cut(s) 352, 365, 370, 416
Hpy188I TCNGA 3 cut(s) 52, 289, 351
Hpy188III TCNNGA 1 cut(s) 413
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 75, 194, 260
HpyF3I CTNAG 4 cut(s) 49, 96, 207, 288
Hsp92II CATG 2 cut(s) 89, 438
Kzo9I GATC 4 cut(s) 174, 336, 346, 379
LpnPI CCDG 6 cut(s) 83, 126, 340, 347, 354, 397
MaeIII GTNAC 3 cut(s) 91, 202, 235
MalI GATC 4 cut(s) 176, 338, 348, 381
MboI GATC 4 cut(s) 174, 336, 346, 379
MfeI CAATTG 1 cut(s) 390
MluCI AATT 3 cut(s) 283, 331, 390
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 5 cut(s) 49, 153, 283, 314, 322
Mph1103I ATGCAT 1 cut(s) 262
MunI CAATTG 1 cut(s) 390
NcoI CCATGG 1 cut(s) 85
NdeII GATC 4 cut(s) 174, 336, 346, 379
NlaIII CATG 2 cut(s) 89, 438
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 262
PfeI GAWTC 3 cut(s) 352, 365, 370
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 426
PspPPI RGGWCCY 1 cut(s) 426
Sau3AI GATC 4 cut(s) 174, 336, 346, 379
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 1 cut(s) 410
SetI ASST 4 cut(s) 60, 102, 133, 431
SinI GGWCC 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
Sse9I AATT 3 cut(s) 283, 331, 390
SsiI CCGC 1 cut(s) 315
StyI CCWWGG 2 cut(s) 85, 429
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 3 cut(s) 335, 368, 378
TasI AATT 3 cut(s) 283, 331, 390
TfiI GAWTC 3 cut(s) 352, 365, 370
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 23, 36, 289
VpaK11BI GGWCC 1 cut(s) 426
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 2 cut(s) 283, 331
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.