RLG00000003436

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001095
Physical Location & Seq
Forward (+)
48486245 .. 48487140
896 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003436

Sequence Viewer

Length: 441 bp
ATGCAGAATATTGTTTACAACTCAAAAAGTGATTCAGAGTTGATTCCAGTTAACGGAACAACAGTAAGCAAATCAACTCATGGAAGCAAAGAAAGAAAACACCAGGGAAAAGAAATATCGAAAGATAGTTTCATTACAACAAGGAAACGCAAATATACAACGAAAAATGATGAAAACTCTTCAAAAAGACTAGCAGAGAGTGGTAAAGGTATAGTTCCATCAGCAGGCAGAAAGGATGTTGTTATCAAAAGAAAGGCTTTTGTAGACGCAACAAATTTTCATCGTTCTCCGGCAACGATGATCGCTGGGAAATGGAAGTGCCCTCAGCAACAAACCTTGATGAAGGAACAAGGAATTTCATATGACTTTCTATTCAAGAAGGAACCGAGTCATATGGATGTCACTCACAAGTACTTCCCGGTTCAAGGGGATTCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.53

Weight (kDa)

9.86

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AcsI RAATTY 2 cut(s) 274, 354
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 3 cut(s) 53, 224, 425
AgsI TTSAA 3 cut(s) 183, 376, 425
AjnI CCWGG 1 cut(s) 102
ApoI RAATTY 2 cut(s) 274, 354
AsuC2I CCSGG 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 104
BcnI CCSGG 1 cut(s) 419
BfaI CTAG 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 2 cut(s) 104, 419
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 104, 419
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 224, 425
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 241, 403
BseLI CCNNNNNNNGG 3 cut(s) 53, 224, 425
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 323
BseYI CCCAGC 1 cut(s) 305
BsiSI CCGG 2 cut(s) 290, 419
BslI CCNNNNNNNGG 3 cut(s) 53, 224, 425
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 384
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 241, 403
BstKTI GATC 1 cut(s) 303
BstMBI GATC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 102, 417
BstSLI GKGCMC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 241, 403
Cac8I GCNNGC 1 cut(s) 226
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 412
CviAII CATG 1 cut(s) 80
CviJI RGCY 1 cut(s) 257
CviKI_1 RGCY 1 cut(s) 257
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 83
FaiI YATR 7 cut(s) 81, 156, 212, 361, 363, 393, 395
FalI AAGNNNNNCTT 2 cut(s) 241, 273
FatI CATG 1 cut(s) 79
FauNDI CATATG 2 cut(s) 361, 393
FblI GTMKAC 1 cut(s) 264
FokI GGATG 2 cut(s) 248, 410
FspBI CTAG 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 309
HapII CCGG 2 cut(s) 290, 419
HgaI GACGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 83
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 4 cut(s) 32, 43, 388, 431
HpaI GTTAAC 1 cut(s) 52
HpaII CCGG 2 cut(s) 290, 419
Hpy166II GTNNAC 3 cut(s) 16, 52, 265
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 3 cut(s) 16, 52, 265
HpyAV CCTTC 2 cut(s) 337, 373
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 300
LpnPI CCDG 7 cut(s) 60, 89, 116, 210, 291, 303, 432
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 400
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 2 cut(s) 274, 354
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 1 cut(s) 333
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 2 cut(s) 290, 419
MspR9I CCNGG 2 cut(s) 104, 419
MvaI CCWGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 419
NdeI CATATG 2 cut(s) 361, 393
NdeII GATC 1 cut(s) 300
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 32, 43, 431
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 384
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 1 cut(s) 300
ScaI AGTACT 1 cut(s) 413
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 104, 419
SduI GDGCHC 1 cut(s) 323
SetI ASST 2 cut(s) 211, 338
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 2 cut(s) 274, 354
SspI AATATT 1 cut(s) 10
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 102, 417
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 119
TasI AATT 2 cut(s) 274, 354
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 3 cut(s) 32, 43, 431
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 5 cut(s) 121, 186, 269, 348, 356
TspGWI ACGGA 1 cut(s) 69
XapI RAATTY 2 cut(s) 274, 354
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.