Rh7CG229000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001095
Physical Location & Seq
Reverse (-)
21361942 .. 21366166
4225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG229000.1

Sequence Viewer

Length: 1935 bp
ATGGAGCATTCGAAGCAGAAACTCCAAACCTCCGATTCTCAGATTCCGGGTTCTTCCTGCTCTCTCTCCATCCCTTCCGAACCTCCTGACCTGGGCAATTGGTTCTCAAGCTACCGCTATGAATCACCTGCAATGAATTCCAATTCTTTTCGCAATGAATTTGATACCGGCGAGATCAAAAGAGAAAAAGACGGAGGAGATTCATGTGGGTTTATGGAAAATGGAAATAAAGTTGGAGTCTTTGTTCATAAGAAGCAGAACTCAAATGAGGTTGTCATATGTGGCAGCTCTTCACAAAACCAATGTTTAAGTAAGATTTCAGGTTCTTTTGAGTCACCTTCGGCCCTTTCAGAGCCTACGCACATCAAAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCATTGGATACAACTGCTGGTTTTGGCGATTCTCTTTGTAAAGAAAGTAAATTTGAGAAGGACGGGTTTTTGGTTGAAAACAGCAACAGAGAAAATGAAGAGGATTTGAGGAATTTTAGTACAAACAGCAGTGTTGGTAAAGAGATTGTGGGTGAGAAGGAACAGTCAGGAGAGCTTGCAAATTGTGACAGCTCTTGGAGAGATACTAAGCAGGCAAGGCAGCCTGTAAGTGAGGCTCCAGGTCCTCTGGAATCACATTTGCTCCTTTCAGAACCTATTCACATCAGAAACTGGTTCTCAAGCTATTTGTATGAGTCTCCTTCCTTGGATATGAATGATAGTTTTGGAGATTCTGTTTGCAAAGAAAGTAAATGTGAGAAGGATGGATTTAGGGTTGAAAAGAGAGATAATGAAGAGGATTTGGGGGATTTTAGAAGAAACAGTGGTGTTGGTGAAGAGGTTGCGGGAGAGAAGAAACAGTCAGTAGGGCTTGCAACATGTGACAGCTCTTGGAGAGTTACCAAGCATGATAGGCAGCCTGTAAGTAAGGTTCTGGGTCCTTTGGATTCCACTTCACACTTGTCAGAGCCTACTGACATCAGAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTTGGATACAGCTGATGGTTTTGGAGATTTTGGTTGTAGAGATAGAATAGATGAGATGGATGAGGTTTTGGTTGAACCCAGTAACAGAGAAGATGGAGAGGGTTTGGAGGGTTTTAGTAAAAAGGAAAGTGATAGGGAAGAGGTTGATGTTGAGAAGGTACAGTCAGAAGAGTTCGCAAAATATAACACCTCTTGCAGATGTAGTGTGGTTGTTGACCCAACCACTGGAGTAGATGAAAATCTATCTGGTAGGAATGATTTGTGTCTTGAATTTACACCTAAAACAGTGCAAAACCATGATACCAGTCAAGCAAAACATGGTGATACATCAAGCTTCAACAAAGGAGTTTCTCAATGCAAACGAGATCAAGAGACTTTGCATGGAACCAGATTTAAGCCATCGAACAAACAGAGAAGTATGTGCAGTAATGATGGCAAATGTCCACAAAACTTAATTCAGAGTAGTGGTTCCACTTTACAGGAGAGCTCAGAAGCAACGGTCCATGCAGAAGATTGTGTACAATTCAAAAGTGATTCAGAGTTAATTCCAGTTAAAGGAGCATCGGTAAGCAAATCAACTCATGGAAGCAAAGAAAGAAAGGATGGGGGAAAAGAAATATCAGAAGATGGTTTCATTACAACAAGGAAACGCAAATTTACCACGAGAAATGATGAAAACTCTTCAAAAAGGCCAGCAGAGAGTAGTAAGGGAACAGTTCCATTAGCAGGCAGAAAGGATGTTGCTATTAAAAGAAAGGCTTTAGCAGACACAACAAATTTTCATCATTCTCCGGCAACGATGATCACTGGGAAATGGAAGCGCCCTCAGCAACGTAAGCCAAATTTAAGACCTCCTTTGAAGCAGCTTGGACTTGAGCAATGGATTCATAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

644

Amino Acids

71.67

Weight (kDa)

5.44

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 1262
AciI CCGC 2 cut(s) 115, 866
AcsI RAATTY 8 cut(s) 136, 158, 452, 514, 1307, 1691, 1813, 1879
AfaI GTAC 3 cut(s) 523, 1197, 1557
AfiI CCNNNNNNNGG 4 cut(s) 92, 1262, 1592, 1763
AflIII ACRYGT 1 cut(s) 899
AgsI TTSAA 8 cut(s) 479, 800, 1112, 1307, 1375, 1564, 1722, 1897
AjnI CCWGG 2 cut(s) 90, 640
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
Alw21I GWGCWC 1 cut(s) 1526
Alw26I GTCTC 4 cut(s) 402, 723, 1038, 1403
AlwNI CAGNNNCTG 2 cut(s) 693, 1008
AoxI GGCC 2 cut(s) 342, 1727
ApeKI GCWGC 4 cut(s) 285, 622, 937, 1900
ApoI RAATTY 8 cut(s) 136, 158, 452, 514, 1307, 1691, 1813, 1879
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 1860
AspS9I GGNCC 4 cut(s) 343, 644, 959, 1537
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 5 cut(s) 117, 327, 566, 866, 1370
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 3 cut(s) 644, 959, 1537
BanII GRGCYC 1 cut(s) 1526
BarI GAAGNNNNNNTAC 2 cut(s) 1539, 1571
BauI CACGAG 1 cut(s) 1699
Bbv12I GWGCWC 1 cut(s) 1526
BbvCI CCTCAGC 1 cut(s) 1863
BbvI GCAGC 4 cut(s) 297, 634, 949, 1912
BccI CCATC 9 cut(s) 77, 779, 1046, 1087, 1124, 1444, 1463, 1634, 1658
BciT130I CCWGG 2 cut(s) 92, 642
BciVI GTATCC 2 cut(s) 403, 1036
BclI TGATCA 1 cut(s) 1839
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 4 cut(s) 402, 723, 1038, 1403
BfoI RGCGCY 1 cut(s) 1861
BfuAI ACCTGC 1 cut(s) 136
BfuI GTATCC 2 cut(s) 403, 1036
BisI GCNGC 4 cut(s) 286, 623, 938, 1901
BlsI GCNGC 4 cut(s) 287, 624, 939, 1902
Bme1390I CCNGG 3 cut(s) 48, 92, 642
Bme18I GGWCC 3 cut(s) 644, 959, 1537
BmgT120I GGNCC 4 cut(s) 343, 644, 959, 1537
BmiI GGNNCC 4 cut(s) 639, 960, 1423, 1507
BmrFI CCNGG 3 cut(s) 48, 92, 642
BmrI ACTGGG 2 cut(s) 1110, 1854
BmsI GCATC 1 cut(s) 1607
BmuI ACTGGG 2 cut(s) 1110, 1854
BpmI CTGGAG 2 cut(s) 624, 1284
Bpu10I CCTNAGC 1 cut(s) 1863
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 5 cut(s) 91, 364, 685, 1000, 1931
BpuMI CCSGG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 1275
BsaJI CCNNGG 2 cut(s) 91, 726
BsaXI ACNNNNNCTCC 8 cut(s) 228, 258, 648, 678, 741, 771, 1587, 1617
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 1262, 1592, 1763
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 8 cut(s) 377, 698, 1013, 1116, 1267, 1341, 1586, 1849
Bse3DI GCAATG 3 cut(s) 138, 160, 1922
Bse8I GATNNNNATC 1 cut(s) 1275
BseBI CCWGG 2 cut(s) 92, 642
BseDI CCNNGG 2 cut(s) 91, 726
BseGI GGATG 5 cut(s) 69, 790, 1102, 1645, 1780
BseJI GATNNNNATC 1 cut(s) 1275
BseLI CCNNNNNNNGG 4 cut(s) 92, 1262, 1592, 1763
BseMI GCAATG 3 cut(s) 138, 160, 1922
BseMII CTCAG 3 cut(s) 53, 1539, 1877
BseNI ACTGG 8 cut(s) 377, 698, 1013, 1116, 1267, 1341, 1586, 1849
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 4 cut(s) 297, 634, 949, 1912
BsgI GTGCAG 1 cut(s) 1480
BshFI GGCC 2 cut(s) 344, 1729
BsiHKAI GWGCWC 1 cut(s) 1526
BsiSI CCGG 3 cut(s) 47, 168, 1829
BslI CCNNNNNNNGG 4 cut(s) 92, 1262, 1592, 1763
BsmAI GTCTC 4 cut(s) 402, 723, 1038, 1403
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 2 cut(s) 344, 1729
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 1526
Bsp1407I TGTACA 1 cut(s) 1555
Bsp143I GATC 3 cut(s) 174, 1402, 1839
BspACI CCGC 2 cut(s) 115, 866
BspANI GGCC 2 cut(s) 344, 1729
BspCNI CTCAG 3 cut(s) 52, 1538, 1876
BspLI GGNNCC 4 cut(s) 639, 960, 1423, 1507
BspMI ACCTGC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 11
BsrDI GCAATG 3 cut(s) 138, 160, 1922
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 1555
BsrI ACTGG 8 cut(s) 377, 698, 1013, 1116, 1267, 1341, 1586, 1849
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 91, 726
BssMI GATC 3 cut(s) 174, 1402, 1839
BssSI CACGAG 1 cut(s) 1699
BssT1I CCWWGG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 1699
Bst2UI CCWGG 2 cut(s) 92, 642
Bst4CI ACNGT 7 cut(s) 567, 845, 882, 1200, 1324, 1537, 1753
Bst6I CTCTTC 7 cut(s) 295, 495, 810, 852, 1170, 1200, 1723
BstAUI TGTACA 1 cut(s) 1555
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 5 cut(s) 579, 615, 894, 1731, 1765
BstDEI CTNAG 4 cut(s) 39, 609, 1525, 1863
BstF5I GGATG 5 cut(s) 69, 790, 1102, 1645, 1780
BstH2I RGCGCY 1 cut(s) 1861
BstHHI GCGC 1 cut(s) 1860
BstKTI GATC 3 cut(s) 177, 1405, 1842
BstMAI GTCTC 4 cut(s) 402, 723, 1038, 1403
BstMBI GATC 3 cut(s) 174, 1402, 1839
BstMWI GCNNNNNNNGC 5 cut(s) 13, 619, 934, 1864, 1873
BstNI CCWGG 2 cut(s) 92, 642
BstNSI RCATGY 1 cut(s) 903
BstSCI CCNGG 3 cut(s) 46, 90, 640
BstV1I GCAGC 4 cut(s) 297, 634, 949, 1912
BsuI GTATCC 2 cut(s) 403, 1036
BsuRI GGCC 2 cut(s) 344, 1729
BtsCI GGATG 5 cut(s) 69, 790, 1102, 1645, 1780
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 5 cut(s) 538, 850, 1260, 1329, 1842
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 5 cut(s) 579, 615, 894, 1731, 1765
CaiI CAGNNNCTG 2 cut(s) 693, 1008
CfoI GCGC 1 cut(s) 1860
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 4 cut(s) 343, 644, 959, 1537
Csp6I GTAC 3 cut(s) 522, 1196, 1556
CviAII CATG 8 cut(s) 204, 900, 929, 1334, 1355, 1418, 1541, 1619
CviQI GTAC 3 cut(s) 522, 1196, 1556
DdeI CTNAG 4 cut(s) 39, 609, 1525, 1863
DpnI GATC 3 cut(s) 176, 1404, 1841
DpnII GATC 3 cut(s) 174, 1402, 1839
Eam1104I CTCTTC 7 cut(s) 295, 495, 810, 852, 1170, 1200, 1723
EarI CTCTTC 7 cut(s) 295, 495, 810, 852, 1170, 1200, 1723
Ecl136II GAGCTC 1 cut(s) 1524
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 1 cut(s) 1526
Eco47I GGWCC 3 cut(s) 644, 959, 1537
Eco53kI GAGCTC 1 cut(s) 1524
EcoICRI GAGCTC 1 cut(s) 1524
EcoO109I RGGNCCY 2 cut(s) 644, 959
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 90, 640
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 1526
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 8 cut(s) 207, 903, 932, 1337, 1358, 1421, 1544, 1622
FalI AAGNNNNNCTT 4 cut(s) 1780, 1812, 1876, 1908
FatI CATG 8 cut(s) 203, 899, 928, 1333, 1354, 1417, 1540, 1618
FauI CCCGC 1 cut(s) 859
FauNDI CATATG 1 cut(s) 278
FbaI TGATCA 1 cut(s) 1839
Fnu4HI GCNGC 4 cut(s) 286, 623, 938, 1901
FokI GGATG 5 cut(s) 56, 797, 1109, 1652, 1787
FriOI GRGCYC 1 cut(s) 1526
Fsp4HI GCNGC 4 cut(s) 286, 623, 938, 1901
GlaI GCGC 1 cut(s) 1859
GluI GCNGC 4 cut(s) 286, 623, 938, 1901
GsuI CTGGAG 2 cut(s) 624, 1284
HaeII RGCGCY 1 cut(s) 1861
HaeIII GGCC 2 cut(s) 344, 1729
HapII CCGG 3 cut(s) 47, 168, 1829
HhaI GCGC 1 cut(s) 1860
Hin1II CATG 8 cut(s) 207, 903, 932, 1337, 1358, 1421, 1544, 1622
Hin6I GCGC 1 cut(s) 1858
HinP1I GCGC 1 cut(s) 1858
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HindIII AAGCTT 1 cut(s) 1369
HpaII CCGG 3 cut(s) 47, 168, 1829
HphI GGTGA 5 cut(s) 117, 327, 566, 866, 1370
Hpy166II GTNNAC 3 cut(s) 1252, 1481, 1556
Hpy188III TCNNGA 5 cut(s) 86, 570, 650, 1304, 1406
Hpy8I GTNNAC 3 cut(s) 1252, 1481, 1556
HpyAV CCTTC 8 cut(s) 84, 348, 411, 454, 553, 732, 775, 1186
HpyCH4III ACNGT 7 cut(s) 567, 845, 882, 1200, 1324, 1537, 1753
HpyCH4IV ACGT 1 cut(s) 1870
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 619, 934, 1864, 1873
HpyF3I CTNAG 4 cut(s) 39, 609, 1525, 1863
HpySE526I ACGT 1 cut(s) 1870
Hsp92II CATG 8 cut(s) 207, 903, 932, 1337, 1358, 1421, 1544, 1622
HspAI GCGC 1 cut(s) 1858
Ksp22I TGATCA 1 cut(s) 1839
Kzo9I GATC 3 cut(s) 174, 1402, 1839
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 4 cut(s) 4, 643, 669, 1595
Lsp1109I GCAGC 4 cut(s) 297, 634, 949, 1912
LweI GCATC 1 cut(s) 1607
MaeII ACGT 1 cut(s) 1870
MaeIII GTNAC 5 cut(s) 333, 587, 902, 919, 1118
MalI GATC 3 cut(s) 176, 1404, 1841
MboI GATC 3 cut(s) 174, 1402, 1839
MfeI CAATTG 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 1526
MlyI GAGTC 5 cut(s) 246, 341, 404, 725, 1040
MmeI TCCRAC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 7 cut(s) 308, 1431, 1490, 1580, 1590, 1785, 1883
MspA1I CMGCKG 1 cut(s) 1049
MspI CCGG 3 cut(s) 47, 168, 1829
MspR9I CCNGG 3 cut(s) 48, 92, 642
MunI CAATTG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 2 cut(s) 92, 642
MwoI GCNNNNNNNGC 5 cut(s) 13, 619, 934, 1864, 1873
NciI CCSGG 1 cut(s) 48
NdeI CATATG 1 cut(s) 278
NdeII GATC 3 cut(s) 174, 1402, 1839
NlaIII CATG 8 cut(s) 207, 903, 932, 1337, 1358, 1421, 1544, 1622
NlaIV GGNNCC 4 cut(s) 639, 960, 1423, 1507
NmuCI GTSAC 3 cut(s) 333, 587, 902
NspI RCATGY 1 cut(s) 903
NspV TTCGAA 1 cut(s) 11
PaqCI CACCTGC 1 cut(s) 136
PciI ACATGT 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 295
PctI GAATGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 1262
PkrI GCNGC 4 cut(s) 287, 624, 939, 1902
PleI GAGTC 5 cut(s) 245, 340, 403, 724, 1039
PpsI GAGTC 5 cut(s) 245, 340, 403, 724, 1039
PpuMI RGGWCCY 2 cut(s) 644, 959
PscI ACATGT 1 cut(s) 899
Psp124BI GAGCTC 1 cut(s) 1526
Psp5II RGGWCCY 2 cut(s) 644, 959
Psp6I CCWGG 2 cut(s) 90, 640
PspGI CCWGG 2 cut(s) 90, 640
PspN4I GGNNCC 4 cut(s) 639, 960, 1423, 1507
PspPI GGNCC 4 cut(s) 343, 644, 959, 1537
PspPPI RGGWCCY 2 cut(s) 644, 959
PsrI GAACNNNNNNTAC 2 cut(s) 936, 968
PstNI CAGNNNCTG 2 cut(s) 693, 1008
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 3 cut(s) 523, 1197, 1557
RsaNI GTAC 3 cut(s) 522, 1196, 1556
SacI GAGCTC 1 cut(s) 1526
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 7 cut(s) 308, 1431, 1490, 1580, 1590, 1785, 1883
SatI GCNGC 4 cut(s) 286, 623, 938, 1901
Sau3AI GATC 3 cut(s) 174, 1402, 1839
Sau96I GGNCC 4 cut(s) 343, 644, 959, 1537
SchI GAGTC 5 cut(s) 246, 341, 404, 725, 1040
ScrFI CCNGG 3 cut(s) 48, 92, 642
SduI GDGCHC 1 cut(s) 1526
SfaNI GCATC 1 cut(s) 1607
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 3 cut(s) 644, 959, 1537
SmlI CTYRAG 5 cut(s) 106, 379, 700, 1015, 1910
SmoI CTYRAG 5 cut(s) 106, 379, 700, 1015, 1910
SsiI CCGC 2 cut(s) 115, 866
SstI GAGCTC 1 cut(s) 1526
StyD4I CCNGG 3 cut(s) 46, 90, 640
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 7 cut(s) 567, 845, 882, 1200, 1324, 1537, 1753
TaiI ACGT 1 cut(s) 1873
TaqI TCGA 2 cut(s) 11, 1439
TatI WGTACW 2 cut(s) 521, 1555
Tru1I TTAA 7 cut(s) 308, 1431, 1490, 1580, 1590, 1785, 1883
Tru9I TTAA 7 cut(s) 308, 1431, 1490, 1580, 1590, 1785, 1883
TscAI CASTG 5 cut(s) 538, 850, 1267, 1329, 1849
TseFI GTSAC 3 cut(s) 333, 587, 902
TseI GCWGC 4 cut(s) 285, 622, 937, 1900
Tsp45I GTSAC 3 cut(s) 333, 587, 902
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 5 cut(s) 538, 850, 1267, 1329, 1849
Van91I CCANNNNNTGG 1 cut(s) 1262
VpaK11BI GGWCC 3 cut(s) 644, 959, 1537
XapI RAATTY 8 cut(s) 136, 158, 452, 514, 1307, 1691, 1813, 1879
XceI RCATGY 1 cut(s) 903
XmnI GAANNNNTTC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.