Rh4AG009600

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001095
Physical Location & Seq
Reverse (-)
1623348 .. 1625274
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG009600.1

Sequence Viewer

Length: 708 bp
ATGTCCGACGACATGGATCTTTCAGAAAAGACAGCTTCACAACCGGTGTGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAACCAAGAAAGAGAAAGAGCCGTCGTCGGCGGCGGCGACAGTCTCCCCAAAATGCCCCTTGGGTTACGATTCGCAGACCTTCAAGCTGGGCCCTCTGAGCTGCATGATATGCCACGCCCTTCTCTTCAACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTTAAGGACTGCCCGTTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAGCTCCAGGGTTTGGTGGATCGCCTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAACGCAGAGGAGATTTCAGGTTCTTCGGAGTCACTTCCGTCCCTTTCAGAGGCTACGCATATCAAAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCATTGGATACAACTGATGGTTTTGACGATTCTCTTTGCAAAGAAAGTAAATGCGAGAAGGCTAGGTTTTTGGTTGGAAACAACAAGAGAGAAAATGAAGAGGATTTGAGGAATTTTAGTATAAAGAGCAGTGTCAGTAAAGAGGTTGTGGGTGAGAAGAAACGGTCAGGAGGGCTTGCAAATTGTGATGCTCTTCGAGAGATACTAAGCAGACAAGGCAGACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006355 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010468 GO:0010556 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030163 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051341 GO:0051353 GO:0051603 GO:0051726 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1902551 GO:1902553 GO:1903047 GO:1903506 GO:2000112 GO:2000468 GO:2000470 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_12 TPR_7 TPR_8 zf-C3HC4_3

Protein Analysis

235

Amino Acids

25.79

Weight (kDa)

6.53

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 334
AccBSI CCGCTC 1 cut(s) 68
AciI CCGC 4 cut(s) 66, 77, 113, 116
AclWI GGATC 2 cut(s) 24, 348
AcsI RAATTY 1 cut(s) 592
AfiI CCNNNNNNNGG 4 cut(s) 287, 334, 352, 430
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 2 cut(s) 166, 211
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 6 cut(s) 35, 169, 183, 293, 325, 462
AluI AGCT 6 cut(s) 35, 169, 183, 293, 325, 462
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 3 cut(s) 130, 381, 480
AlwI GGATC 2 cut(s) 24, 348
AoxI GGCC 1 cut(s) 172
ApaI GGGCCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 592
AsiGI ACCGGT 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 172, 173
AsuHPI GGTGA 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 176
BanII GRGCYC 2 cut(s) 176, 327
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 491
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 329
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 3 cut(s) 130, 381, 480
BfaI CTAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 4 cut(s) 66, 114, 117, 184
BlsI GCNGC 4 cut(s) 67, 115, 118, 185
Bme1390I CCNGG 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 172, 173
BmiI GGNNCC 3 cut(s) 81, 174, 312
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 141, 328
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 334, 352, 430
Bse118I RCCGGY 2 cut(s) 43, 73
Bse1I ACTGG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 141, 328
BseLI CCNNNNNNNGG 4 cut(s) 287, 334, 352, 430
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 174
BshTI ACCGGT 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 44, 74
BslFI GGGAC 2 cut(s) 212, 406
BslI CCNNNNNNNGG 4 cut(s) 287, 334, 352, 430
BsmAI GTCTC 3 cut(s) 130, 381, 480
BsmFI GGGAC 2 cut(s) 212, 406
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 381
Bsp120I GGGCCC 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 176, 327
Bsp143I GATC 2 cut(s) 16, 340
BspACI CCGC 4 cut(s) 66, 77, 113, 116
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 81, 174, 312
BspPI GGATC 2 cut(s) 24, 348
BspQI GCTCTTC 1 cut(s) 678
BspTNI GGTCTC 1 cut(s) 381
BsrBI CCGCTC 1 cut(s) 68
BsrFI RCCGGY 2 cut(s) 43, 73
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 2 cut(s) 43, 73
BssECI CCNNGG 2 cut(s) 141, 328
BssMI GATC 2 cut(s) 16, 340
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 3 cut(s) 124, 645, 705
Bst6I CTCTTC 3 cut(s) 212, 573, 678
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 360, 657
BstDEI CTNAG 2 cut(s) 179, 686
BstENI CCTNNNNNAGG 2 cut(s) 350, 428
BstKTI GATC 2 cut(s) 19, 343
BstMAI GTCTC 3 cut(s) 130, 381, 480
BstMBI GATC 2 cut(s) 16, 340
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 4 cut(s) 74, 180, 192, 696
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 360, 657
Cfr10I RCCGGY 2 cut(s) 43, 73
Cfr13I GGNCC 2 cut(s) 172, 173
CseI GACGC 1 cut(s) 214
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 3 cut(s) 13, 187, 359
DdeI CTNAG 2 cut(s) 179, 686
DpnI GATC 2 cut(s) 18, 342
DpnII GATC 2 cut(s) 16, 340
Eam1104I CTCTTC 3 cut(s) 212, 573, 678
EarI CTCTTC 3 cut(s) 212, 573, 678
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 176, 327
Eco31I GGTCTC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 325
EcoNI CCTNNNNNAGG 2 cut(s) 350, 428
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 176, 327
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 16, 190, 362
FaiI YATR 9 cut(s) 14, 188, 193, 360, 381, 441, 465, 471, 602
FaqI GGGAC 2 cut(s) 212, 406
FatI CATG 3 cut(s) 12, 186, 358
Fnu4HI GCNGC 4 cut(s) 66, 114, 117, 184
FriOI GRGCYC 2 cut(s) 176, 327
Fsp4HI GCNGC 4 cut(s) 66, 114, 117, 184
FspBI CTAG 1 cut(s) 543
GluI GCNGC 4 cut(s) 66, 114, 117, 184
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 174
HapII CCGG 2 cut(s) 44, 74
HgaI GACGC 1 cut(s) 214
Hin1II CATG 3 cut(s) 16, 190, 362
HinfI GANTC 5 cut(s) 152, 366, 410, 473, 509
HpaII CCGG 2 cut(s) 44, 74
HphI GGTGA 1 cut(s) 644
Hpy188I TCNGA 6 cut(s) 7, 25, 180, 322, 409, 430
Hpy188III TCNNGA 5 cut(s) 58, 264, 370, 648, 677
Hpy99I CGWCG 3 cut(s) 11, 109, 112
HpyAV CCTTC 5 cut(s) 172, 212, 253, 489, 532
HpyCH4III ACNGT 3 cut(s) 124, 645, 705
HpyCH4V TGCA 4 cut(s) 186, 249, 519, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 180, 192, 696
HpyF3I CTNAG 2 cut(s) 179, 686
Hsp92II CATG 3 cut(s) 16, 190, 362
Kzo9I GATC 2 cut(s) 16, 340
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 3 cut(s) 79, 290, 330
LpnPI CCDG 9 cut(s) 57, 87, 155, 314, 341, 376, 384, 436, 633
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 658
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 2 cut(s) 146, 411
MalI GATC 2 cut(s) 18, 342
MbiI CCGCTC 1 cut(s) 68
MboI GATC 2 cut(s) 16, 340
MboII GAAGA 6 cut(s) 199, 316, 396, 590, 649, 665
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 176, 327
MluCI AATT 3 cut(s) 316, 592, 661
MlyI GAGTC 2 cut(s) 419, 482
MmeI TCCRAC 2 cut(s) 30, 535
MseI TTAA 1 cut(s) 270
MspI CCGG 2 cut(s) 44, 74
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 4 cut(s) 74, 180, 192, 696
NdeII GATC 2 cut(s) 16, 340
NlaIII CATG 3 cut(s) 16, 190, 362
NlaIV GGNNCC 3 cut(s) 81, 174, 312
NmuCI GTSAC 1 cut(s) 411
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PfeI GAWTC 3 cut(s) 152, 366, 509
PflMI CCANNNNNTGG 1 cut(s) 334
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 4 cut(s) 67, 115, 118, 185
PleI GAGTC 2 cut(s) 418, 481
PpsI GAGTC 2 cut(s) 418, 481
Psp124BI GAGCTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 81, 174, 312
PspOMI GGGCCC 1 cut(s) 172
PspPI GGNCC 2 cut(s) 172, 173
PsuI RGATCY 1 cut(s) 16
SacI GAGCTC 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 4 cut(s) 66, 114, 117, 184
Sau3AI GATC 2 cut(s) 16, 340
Sau96I GGNCC 2 cut(s) 172, 173
SchI GAGTC 2 cut(s) 419, 482
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 2 cut(s) 176, 327
SfaNI GCATC 1 cut(s) 658
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SphI GCATGC 1 cut(s) 362
Sse9I AATT 3 cut(s) 316, 592, 661
SsiI CCGC 4 cut(s) 66, 77, 113, 116
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 124, 645, 705
TaqI TCGA 3 cut(s) 70, 263, 676
TasI AATT 3 cut(s) 316, 592, 661
TauI GCSGC 3 cut(s) 68, 116, 119
TfiI GAWTC 3 cut(s) 152, 366, 509
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 2 cut(s) 471, 591
TspGWI ACGGA 3 cut(s) 42, 323, 408
TspRI CASTG 1 cut(s) 616
Van91I CCANNNNNTGG 1 cut(s) 334
XagI CCTNNNNNAGG 2 cut(s) 350, 428
XapI RAATTY 1 cut(s) 592
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.