Prupe.4G179300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001095
Physical Location & Seq
Forward (+)
10625034 .. 10628440
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G179300.2

Sequence Viewer

Length: 1521 bp
ATGGGAGGGCCTCCAGATCTGAAAAACTGGCTCCCAAGATACCAGTATGAATCACCTGCACTGAATTCCGAGTCGTTGCTAGATGATTTCGGCATCGATGAAGTCGAAAGAGAAGAAAAAGAAGAAAATTCAGTTGGGTTCAGGGGAAATGGAAATAAAGATGGAGCTTTTGTCCATGAGAAGCAAATCTCAAATGGGGTTGTGGAATCTGGCAGCTCTTCTGGAAATGAGCATGAAAACCAATATTTAAGTAAGATTCCAGATTCTTCGGAATCAACTTCGTTCACTTCAGAGCCCACTGACATCAGAAACTGGTTCTCAAGCTATGTGTATGAATCTCCTTCATTGGATACAACTGATGATTTTGGAGATTCTGTTGGCAAAGAAAGTAAACATGAGAAGGATGGCTTTTTGGTTGGAAACAGAAACAGGGAAAAAGAAAAGGTATTAGGGGATTTTAGCATAAACAGAAGTGATAGCGAGGAGGTTGTTGGTGAAACGGTACAGTCAGATGGGCTTGCAAATTGCAGCATCTCTTTGAGAGATAATGAGCAGGAAAGGCAGCCTTTAAGTGAGACTCCAGGTCCTTTGGAGTCACCTTCACTCCTTTCAGAGCCTATTGACATCAGAAACTGGTTCTCAAGCTATGTGTACGAATCTCCTTTGGTTGAGACAAATGATTGTTTTGGAGATTTTGTTTGCAAAGAAAATAGAAGTGGGAAGGATCGGTTTCTGGTTGAAAACAGAAACAGAGGAAAAGAAGAGGTTTTGGAGGATTTCAGTAAAAAGAGAACTGATGGTGAAGAGGTTGTTGAGTTGCAGTCTGAAGGGCTTGCAAAATGTGTCAGCCCTGGGAGAGATAATAAGCAGGAAACAAAACCTGTAAGTGAGGGTCATCCCAGTCGAGTAGATGAAAACCTACCTAGTCAGAATGATTTGTATCTCAACCATATGCCTAAATCATTGGAAAACCATCTTATGGGTTCAGCACAAGATGTCGAAATAGGTTCTCAATCCACCAAAATAAAGCCATCGAACATCGAAAGAAGTTCATGCTGCAATAATGAGAAGTCTCCACAATACATGACTCATAACAAGGATTTCACTTTACAGGACAATTCAGAAGCAAAATCCCATGCAGAAGTTGATTGTTTATTAATTCAAGGTGATGCAGATTTAATTCCAGTTAATGGAGCGTCAAAAAGAAAACCAACTCATGGAGGCGTTAATGGAAAAGAAATATCAGAAGATGGTTTTATTAGAACAAGGAAAGACAAACTTCCAAGAAAAAGTTATGAAAATATTATGGAAGGACGACAAGAGATCAGTAAAGTAACAGCTCCATTAGCAGGTGGAAGGGATGCTGTAGTGAAAAGAAAGCCCTTAGCAGATGCAACAAATTTTCATCATTCTCCTGCGATGGAGATCACTGGAAAATGGAAGTGTCCTCAGAAAAGTAAGCCAAATCTAGGACCCTCTTTGAAGCAGCTTCGACTAGAAAAATGGGTTCGAAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

507

Amino Acids

56.58

Weight (kDa)

5.12

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 64, 1340
Acc36I ACCTGC 2 cut(s) 64, 1340
AccB7I CCANNNNNTGG 3 cut(s) 979, 1190, 1217
AclWI GGATC 1 cut(s) 732
AcsI RAATTY 3 cut(s) 64, 127, 1399
AcuI CTGAAG 2 cut(s) 273, 846
AfaI GTAC 2 cut(s) 504, 653
AfiI CCNNNNNNNGG 5 cut(s) 979, 1190, 1217, 1349, 1469
AgsI TTSAA 3 cut(s) 740, 1163, 1483
AhdI GACNNNNNGTC 1 cut(s) 582
AjnI CCWGG 2 cut(s) 580, 850
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 6 cut(s) 167, 216, 324, 645, 1340, 1489
AluI AGCT 6 cut(s) 167, 216, 324, 645, 1340, 1489
Alw26I GTCTC 3 cut(s) 569, 665, 1077
AlwI GGATC 1 cut(s) 732
AlwNI CAGNNNCTG 2 cut(s) 312, 633
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 5 cut(s) 213, 528, 562, 1056, 1486
ApoI RAATTY 3 cut(s) 64, 127, 1399
AseI ATTAAT 1 cut(s) 1157
AspS9I GGNCC 3 cut(s) 8, 584, 1472
AsuHPI GGTGA 5 cut(s) 45, 506, 588, 812, 1178
AsuII TTCGAA 1 cut(s) 1510
AvaII GGWCC 2 cut(s) 584, 1472
BanII GRGCYC 1 cut(s) 297
BbvI GCAGC 5 cut(s) 225, 540, 574, 1043, 1498
BccI CCATC 8 cut(s) 155, 398, 506, 791, 981, 1039, 1244, 1414
BciT130I CCWGG 2 cut(s) 582, 852
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 569, 665, 1077
BfaI CTAG 4 cut(s) 80, 924, 1469, 1496
BfmI CTRYAG 1 cut(s) 1365
BfuAI ACCTGC 2 cut(s) 64, 1340
BfuI GTATCC 1 cut(s) 343
BglII AGATCT 1 cut(s) 16
BisI GCNGC 5 cut(s) 214, 529, 563, 1057, 1487
BlsI GCNGC 5 cut(s) 215, 530, 564, 1058, 1488
Bme1390I CCNGG 2 cut(s) 582, 852
Bme18I GGWCC 2 cut(s) 584, 1472
BmeRI GACNNNNNGTC 1 cut(s) 582
BmgT120I GGNCC 3 cut(s) 8, 584, 1472
BmiI GGNNCC 2 cut(s) 32, 1474
BmrFI CCNGG 2 cut(s) 582, 852
BmrI ACTGGG 1 cut(s) 894
BmsI GCATC 5 cut(s) 102, 540, 1159, 1351, 1381
BmuI ACTGGG 1 cut(s) 894
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 1384
Bpu14I TTCGAA 1 cut(s) 1510
BpuEI CTTGAG 2 cut(s) 304, 625
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 2 cut(s) 939, 1424
BsaJI CCNNGG 2 cut(s) 850, 851
BsaXI ACNNNNNCTCC 8 cut(s) 156, 186, 360, 390, 588, 618, 681, 711
Bsc4I CCNNNNNNNGG 5 cut(s) 979, 1190, 1217, 1349, 1469
Bse1I ACTGG 7 cut(s) 32, 43, 317, 638, 900, 1184, 1435
Bse8I GATNNNNATC 2 cut(s) 939, 1424
BseBI CCWGG 2 cut(s) 582, 852
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 850, 851
BseGI GGATG 3 cut(s) 409, 895, 1366
BseJI GATNNNNATC 2 cut(s) 939, 1424
BseLI CCNNNNNNNGG 5 cut(s) 979, 1190, 1217, 1349, 1469
BseMII CTCAG 1 cut(s) 1463
BseNI ACTGG 7 cut(s) 32, 43, 317, 638, 900, 1184, 1435
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 5 cut(s) 225, 540, 574, 1043, 1498
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 96
BslI CCNNNNNNNGG 5 cut(s) 979, 1190, 1217, 1349, 1469
BsmAI GTCTC 3 cut(s) 569, 665, 1077
BsnI GGCC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 1510
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 4 cut(s) 16, 724, 1323, 1425
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 1462
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 32, 1474
BspMI ACCTGC 2 cut(s) 64, 1340
BspPI GGATC 1 cut(s) 732
BspQI GCTCTTC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 1510
BsrI ACTGG 7 cut(s) 32, 43, 317, 638, 900, 1184, 1435
BssECI CCNNGG 2 cut(s) 850, 851
BssMI GATC 4 cut(s) 16, 724, 1323, 1425
Bst2UI CCWGG 2 cut(s) 582, 852
Bst4CI ACNGT 2 cut(s) 502, 507
Bst6I CTCTTC 3 cut(s) 223, 756, 798
BstBI TTCGAA 1 cut(s) 1510
BstC8I GCNNGC 2 cut(s) 519, 834
BstDEI CTNAG 2 cut(s) 1384, 1449
BstF5I GGATG 3 cut(s) 409, 895, 1366
BstKTI GATC 4 cut(s) 19, 727, 1326, 1428
BstMAI GTCTC 3 cut(s) 569, 665, 1077
BstMBI GATC 4 cut(s) 16, 724, 1323, 1425
BstMWI GCNNNNNNNGC 2 cut(s) 559, 1346
BstNI CCWGG 2 cut(s) 582, 852
BstSCI CCNGG 2 cut(s) 580, 850
BstSFI CTRYAG 1 cut(s) 1365
BstV1I GCAGC 5 cut(s) 225, 540, 574, 1043, 1498
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 1433
BtsCI GGATG 3 cut(s) 409, 895, 1366
BtsIMutI CAGTG 3 cut(s) 59, 297, 1428
BveI ACCTGC 2 cut(s) 64, 1340
Cac8I GCNNGC 2 cut(s) 519, 834
CaiI CAGNNNCTG 2 cut(s) 312, 633
Cfr13I GGNCC 3 cut(s) 8, 584, 1472
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 1185
Csp6I GTAC 2 cut(s) 503, 652
CviAII CATG 7 cut(s) 176, 233, 395, 1053, 1084, 1136, 1217
CviQI GTAC 2 cut(s) 503, 652
DdeI CTNAG 2 cut(s) 1384, 1449
DpnI GATC 4 cut(s) 18, 726, 1325, 1427
DpnII GATC 4 cut(s) 16, 724, 1323, 1425
DriI GACNNNNNGTC 1 cut(s) 582
Eam1104I CTCTTC 3 cut(s) 223, 756, 798
Eam1105I GACNNNNNGTC 1 cut(s) 582
EarI CTCTTC 3 cut(s) 223, 756, 798
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 584, 1472
Eco57I CTGAAG 2 cut(s) 273, 846
EcoO109I RGGNCCY 3 cut(s) 8, 584, 1472
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 580, 850
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 7 cut(s) 179, 236, 398, 1056, 1087, 1139, 1220
FalI AAGNNNNNCTT 6 cut(s) 392, 424, 550, 582, 1263, 1295
FatI CATG 7 cut(s) 175, 232, 394, 1052, 1083, 1135, 1216
FauNDI CATATG 1 cut(s) 951
Fnu4HI GCNGC 5 cut(s) 214, 529, 563, 1057, 1487
FokI GGATG 3 cut(s) 416, 882, 1373
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 5 cut(s) 214, 529, 563, 1057, 1487
FspBI CTAG 4 cut(s) 80, 924, 1469, 1496
GluI GCNGC 5 cut(s) 214, 529, 563, 1057, 1487
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 1 cut(s) 10
HgaI GACGC 1 cut(s) 1185
Hin1II CATG 7 cut(s) 179, 236, 398, 1056, 1087, 1139, 1220
HphI GGTGA 5 cut(s) 45, 506, 588, 812, 1178
Hpy166II GTNNAC 3 cut(s) 285, 392, 652
Hpy188III TCNNGA 3 cut(s) 14, 222, 260
Hpy8I GTNNAC 3 cut(s) 285, 392, 652
HpyAV CCTTC 7 cut(s) 351, 394, 609, 715, 821, 1304, 1350
HpyCH4III ACNGT 2 cut(s) 502, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 559, 1346
HpyF3I CTNAG 2 cut(s) 1384, 1449
Hsp92II CATG 7 cut(s) 179, 236, 398, 1056, 1087, 1139, 1220
Kzo9I GATC 4 cut(s) 16, 724, 1323, 1425
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 4 cut(s) 36, 164, 1193, 1345
Lsp1109I GCAGC 5 cut(s) 225, 540, 574, 1043, 1498
LweI GCATC 5 cut(s) 102, 540, 1159, 1351, 1381
MaeI CTAG 4 cut(s) 80, 924, 1469, 1496
MaeIII GTNAC 2 cut(s) 594, 1333
MalI GATC 4 cut(s) 18, 726, 1325, 1427
MboI GATC 4 cut(s) 16, 724, 1323, 1425
MboII GAAGA 7 cut(s) 125, 134, 210, 258, 773, 815, 1259
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 7 cut(s) 64, 127, 523, 1117, 1158, 1179, 1399
MlyI GAGTC 4 cut(s) 80, 571, 602, 1081
MmeI TCCRAC 1 cut(s) 397
MseI TTAA 6 cut(s) 248, 569, 1157, 1178, 1188, 1227
MspR9I CCNGG 2 cut(s) 582, 852
MvaI CCWGG 2 cut(s) 582, 852
MwoI GCNNNNNNNGC 2 cut(s) 559, 1346
NdeI CATATG 1 cut(s) 951
NdeII GATC 4 cut(s) 16, 724, 1323, 1425
NlaIII CATG 7 cut(s) 179, 236, 398, 1056, 1087, 1139, 1220
NlaIV GGNNCC 2 cut(s) 32, 1474
NmuCI GTSAC 1 cut(s) 594
NspV TTCGAA 1 cut(s) 1510
PaqCI CACCTGC 2 cut(s) 64, 1340
PasI CCCWGGG 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 8 cut(s) 50, 206, 256, 263, 272, 335, 371, 656
PflMI CCANNNNNTGG 3 cut(s) 979, 1190, 1217
PkrI GCNGC 5 cut(s) 215, 530, 564, 1058, 1488
PleI GAGTC 4 cut(s) 79, 571, 601, 1081
PpsI GAGTC 4 cut(s) 79, 571, 601, 1081
PpuMI RGGWCCY 2 cut(s) 584, 1472
PshBI ATTAAT 1 cut(s) 1157
Psp5II RGGWCCY 2 cut(s) 584, 1472
Psp6I CCWGG 2 cut(s) 580, 850
PspGI CCWGG 2 cut(s) 580, 850
PspN4I GGNNCC 2 cut(s) 32, 1474
PspPI GGNCC 3 cut(s) 8, 584, 1472
PspPPI RGGWCCY 2 cut(s) 584, 1472
PstNI CAGNNNCTG 2 cut(s) 312, 633
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 504, 653
RsaNI GTAC 2 cut(s) 503, 652
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 6 cut(s) 248, 569, 1157, 1178, 1188, 1227
SatI GCNGC 5 cut(s) 214, 529, 563, 1057, 1487
Sau3AI GATC 4 cut(s) 16, 724, 1323, 1425
Sau96I GGNCC 3 cut(s) 8, 584, 1472
SchI GAGTC 4 cut(s) 80, 571, 602, 1081
ScrFI CCNGG 2 cut(s) 582, 852
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 5 cut(s) 102, 540, 1159, 1351, 1381
SfcI CTRYAG 1 cut(s) 1365
SfuI TTCGAA 1 cut(s) 1510
SinI GGWCC 2 cut(s) 584, 1472
SmlI CTYRAG 2 cut(s) 319, 640
SmoI CTYRAG 2 cut(s) 319, 640
Sse9I AATT 7 cut(s) 64, 127, 523, 1117, 1158, 1179, 1399
SspI AATATT 2 cut(s) 245, 1303
SspMI CTAG 4 cut(s) 80, 924, 1469, 1496
StyD4I CCNGG 2 cut(s) 580, 850
TaaI ACNGT 2 cut(s) 502, 507
TaqI TCGA 8 cut(s) 96, 105, 904, 999, 1034, 1041, 1492, 1510
TasI AATT 7 cut(s) 64, 127, 523, 1117, 1158, 1179, 1399
TfiI GAWTC 8 cut(s) 50, 206, 256, 263, 272, 335, 371, 656
Tru1I TTAA 6 cut(s) 248, 569, 1157, 1178, 1188, 1227
Tru9I TTAA 6 cut(s) 248, 569, 1157, 1178, 1188, 1227
TscAI CASTG 3 cut(s) 66, 304, 1435
TseFI GTSAC 1 cut(s) 594
TseI GCWGC 5 cut(s) 213, 528, 562, 1056, 1486
Tsp45I GTSAC 1 cut(s) 594
TspDTI ATGAA 9 cut(s) 63, 114, 249, 333, 348, 927, 1041, 1311, 1394
TspRI CASTG 3 cut(s) 66, 304, 1435
Van91I CCANNNNNTGG 3 cut(s) 979, 1190, 1217
VpaK11BI GGWCC 2 cut(s) 584, 1472
VspI ATTAAT 1 cut(s) 1157
XapI RAATTY 3 cut(s) 64, 127, 1399
XspI CTAG 4 cut(s) 80, 924, 1469, 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.