Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001095

Physical Location & Seq

Genomic Coordinates Reverse (-)

15738173 .. 15738616

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTGAAGAAAGTGAGATAGATGAAGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGAGTATTTTCTGAAAACATAAAAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015934 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030627 GO:0031323 GO:0031324 GO:0032991 GO:0033119 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036002 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043484 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:1903312 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

87

Amino Acids

10.01

Weight (kDa)

4.78

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29790 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G43880 AT4G07526 AT4G07526 AT4G07526 AT4G16807
fragaria_vesca	FvH4_2g33151 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900
malus_domestica	MD06G1050900.v1.1
prunus_persica	Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1
pyrus_communis	pycom06g04320
rosa_chinensis	RchiOBHm_Chr1g0325401 RchiOBHm_Chr7g0204751
rosa_laevigata	RLG00000003436 RLG00000010189 RLG00000012666
rosa_multiflora	Rmu_sc0002157.1_g000033 Rmu_sc0003221.1_g000060
rosa_roxburghii	Rroxscaffold_3G00252850 Rroxscaffold_5G00333620
rosa_rugosa	Rorug03G0305000 Rorug03G0305400.1 Rorug07G0085800
rosa_samantha	Rh2CG177800 Rh3DG262600 Rh4AG008300 Rh4AG009100 Rh4AG009600 Rh4AG021000 Rh4BG006400 Rh4CG009000 Rh4CG010000 Rh4CG010100 Rh4DG007700 Rh5AG385100 Rh5CG420300 Rh6AG282900 Rh6AG404200 Rh6BG283700 Rh6CG285600 Rh6DG278700 Rh7AG215800 Rh7BG212900 Rh7CG229000 Rh7DG223400
rosa_wichuraiana	Rw4G000190 Rw4G000230 Rw7G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	2 cut(s)	256, 261
AluI	AGCT	2 cut(s)	256, 261
Alw26I	GTCTC	3 cut(s)	79, 102, 229
BbsI	GAAGAC	1 cut(s)	171
BcoDI	GTCTC	3 cut(s)	79, 102, 229
BfmI	CTRYAG	1 cut(s)	169
BlpI	GCTNAGC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	3 cut(s)	72, 113, 248
BsmAI	GTCTC	3 cut(s)	79, 102, 229
Bsp1720I	GCTNAGC	1 cut(s)	257
BspCNI	CTCAG	3 cut(s)	73, 112, 249
BspMAI	CTGCAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	82, 227
BstDEI	CTNAG	4 cut(s)	81, 99, 189, 257
BstMAI	GTCTC	3 cut(s)	79, 102, 229
BstSFI	CTRYAG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	54
CviJI	RGCY	3 cut(s)	86, 256, 261
CviKI_1	RGCY	3 cut(s)	86, 256, 261
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	4 cut(s)	81, 99, 189, 257
Eam1104I	CTCTTC	2 cut(s)	82, 227
EarI	CTCTTC	2 cut(s)	82, 227
FaiI	YATR	4 cut(s)	95, 131, 221, 251
HinfI	GANTC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	82, 121, 214
Hpy188III	TCNNGA	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	171
HpyF3I	CTNAG	4 cut(s)	81, 99, 189, 257
MboII	GAAGA	5 cut(s)	69, 134, 158, 176, 244
MluCI	AATT	2 cut(s)	45, 68
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	48
SetI	ASST	6 cut(s)	55, 190, 202, 250, 258, 263
SfcI	CTRYAG	1 cut(s)	169
SgeI	CNNG	5 cut(s)	24, 35, 50, 119, 149
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	45, 68
TasI	AATT	2 cut(s)	45, 68
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	146, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.