Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001095

Physical Location & Seq

Genomic Coordinates Reverse (-)

50679486 .. 50682463

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG283700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTCCTCCTTTTGGCGGCAGTGCTGGTGAGCTTTTGCCTTTTGAATTCATTTTTCCCCTTCGAGGGTGATGGCTGGGTGTTAAATGACGCTAGTGGTGGCAGAATTGCTTTAGATCGGGAGGTTGGATCTGATTTGCAGATGGTGGCGGCAACGGCGAAGTTTCGCAGGCTAGCCTTAGATCAAGGGTGGCTGCGGCAATGGCTGACAATGGACGACTTCATCCGCAAATCCTCTGCTTCAATCCCCAGAAATTCGATCCCTGCTGATCTGATTCCTTTGCTGGATTCGATTCGGTTCGATCCCTGCTCAATTGGGTGCTTGCTTATGTCTCAAGACTCATTGGGGACCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

4.66

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29790 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G33528 AT3G43880 AT4G07526 AT4G07526 AT4G07526 AT4G16807
fragaria_vesca	FvH4_2g33151 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900 FvH4_5g19900
malus_domestica	MD06G1050900.v1.1
prunus_persica	Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1 Prupe.4G179300_v2.0.a1
pyrus_communis	pycom06g04320
rosa_chinensis	RchiOBHm_Chr1g0325401 RchiOBHm_Chr7g0204751
rosa_laevigata	RLG00000003436 RLG00000010189 RLG00000012666
rosa_multiflora	Rmu_sc0002157.1_g000033 Rmu_sc0003221.1_g000060
rosa_roxburghii	Rroxscaffold_3G00252850 Rroxscaffold_5G00333620
rosa_rugosa	Rorug03G0305000 Rorug03G0305400.1 Rorug07G0085800
rosa_samantha	Rh2CG177800 Rh3DG262600 Rh4AG008300 Rh4AG009100 Rh4AG009600 Rh4AG021000 Rh4BG006400 Rh4CG009000 Rh4CG010000 Rh4CG010100 Rh4DG007700 Rh5AG385100 Rh5CG420300 Rh6AG282900 Rh6AG404200 Rh6BG283700 Rh6CG285600 Rh6DG278700 Rh7AG215800 Rh7BG212900 Rh7CG229000 Rh7DG223400
rosa_wichuraiana	Rw4G000190 Rw4G000230 Rw7G018710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	17, 149, 196, 226
AclWI	GGATC	3 cut(s)	136, 253, 296
AcsI	RAATTY	2 cut(s)	46, 253
AfiI	CCNNNNNNNGG	4 cut(s)	13, 16, 64, 65
AgsI	TTSAA	2 cut(s)	46, 243
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	3 cut(s)	136, 253, 296
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	46, 253
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	40, 80
AsuNHI	GCTAGC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	2 cut(s)	65, 136
BceAI	ACGGC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	93, 173
BisI	GCNGC	4 cut(s)	18, 150, 194, 197
BlsI	GCNGC	4 cut(s)	19, 151, 195, 198
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	349
BmtI	GCTAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 16, 64, 65
Bse3DI	GCAATG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	4 cut(s)	13, 16, 64, 65
BseMI	GCAATG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	75
BslI	CCNNNNNNNGG	4 cut(s)	13, 16, 64, 65
BsmAI	GTCTC	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
BspACI	CCGC	4 cut(s)	17, 149, 196, 226
BspLI	GGNNCC	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	3 cut(s)	136, 253, 296
BsrDI	GCAATG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
BssT1I	CCWWGG	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	170, 174, 323
BstDEI	CTNAG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	6 cut(s)	118, 131, 184, 261, 271, 304
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 202
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	170, 174, 323
Cfr13I	GGNCC	1 cut(s)	348
CseI	GACGC	1 cut(s)	98
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	6 cut(s)	33, 75, 172, 176, 193, 205
CviKI_1	RGCY	6 cut(s)	33, 75, 172, 176, 193, 205
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	6 cut(s)	117, 130, 183, 260, 270, 303
DpnII	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	360
FaiI	YATR	2 cut(s)	329, 358
FatI	CATG	1 cut(s)	356
Fnu4HI	GCNGC	4 cut(s)	18, 150, 194, 197
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	18, 150, 194, 197
FspBI	CTAG	2 cut(s)	93, 173
GluI	GCNGC	4 cut(s)	18, 150, 194, 197
GsaI	CCCAGC	1 cut(s)	79
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	360
HinfI	GANTC	4 cut(s)	274, 287, 292, 338
HphI	GGTGA	2 cut(s)	40, 80
Hpy188I	TCNGA	2 cut(s)	133, 273
Hpy188III	TCNNGA	2 cut(s)	119, 335
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 202
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	11, 61, 154, 262, 269, 276, 319
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	93, 173
MalI	GATC	6 cut(s)	117, 130, 183, 260, 270, 303
MboI	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	4 cut(s)	46, 105, 253, 312
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	4 cut(s)	17, 58, 115, 244
MseI	TTAA	1 cut(s)	83
MunI	CAATTG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	155, 202
NdeII	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	360
NlaIV	GGNNCC	1 cut(s)	349
PfeI	GAWTC	3 cut(s)	274, 287, 292
PkrI	GCNGC	4 cut(s)	19, 151, 195, 198
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	348
PspPPI	RGGWCCY	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	4 cut(s)	18, 150, 194, 197
Sau3AI	GATC	6 cut(s)	115, 128, 181, 258, 268, 301
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	332
SetI	ASST	3 cut(s)	35, 126, 353
SinI	GGWCC	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	46, 105, 253, 312
SsiI	CCGC	4 cut(s)	17, 149, 196, 226
SspMI	CTAG	2 cut(s)	93, 173
StyI	CCWWGG	1 cut(s)	351
TaqI	TCGA	4 cut(s)	63, 257, 290, 300
TasI	AATT	4 cut(s)	46, 105, 253, 312
TauI	GCSGC	3 cut(s)	20, 152, 199
TfiI	GAWTC	3 cut(s)	274, 287, 292
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	39, 211
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	2 cut(s)	46, 253
XspI	CTAG	2 cut(s)	93, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.