Rroxscaffold_5G00333620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001095
Physical Location & Seq
Reverse (-)
1047869 .. 1054738
6870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333620.1

Sequence Viewer

Length: 204 bp
ATGCAAGAACCTCCTGATCTGGGCAATCGGTTTGGAAGCTACCGCTATGAATCACCTCTAATGAATTCCAATCGTTTTCGCAGTGAATTCGATGGCAGCGGCAGTGAAACAGAAAGAGAAAAAGAAGAAGGAAAATCATGTGGGTTTATTGGAAATGGAAATAAAGTTGGAGTCTTTGTTCATAAGAAGCAGAACTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.58

Weight (kDa)

7.88

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 43, 99
AcsI RAATTY 2 cut(s) 64, 86
AfiI CCNNNNNNNGG 1 cut(s) 20
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 2 cut(s) 64, 86
AsuHPI GGTGA 1 cut(s) 45
BbvI GCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BisI GCNGC 2 cut(s) 97, 100
BlsI GCNGC 2 cut(s) 98, 101
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 2 cut(s) 43, 99
BssMI GATC 1 cut(s) 16
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 108
BtsI GCAGTG 2 cut(s) 88, 109
BtsIMutI CAGTG 2 cut(s) 88, 109
CviAII CATG 1 cut(s) 138
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EcoRI GAATTC 2 cut(s) 64, 86
FaeI CATG 1 cut(s) 141
FaiI YATR 3 cut(s) 48, 139, 183
FatI CATG 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 97, 100
Fsp4HI GCNGC 2 cut(s) 97, 100
GluI GCNGC 2 cut(s) 97, 100
Hin1II CATG 1 cut(s) 141
HinfI GANTC 2 cut(s) 50, 171
HphI GGTGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 141
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 5, 27
Lsp1109I GCAGC 1 cut(s) 108
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 137
MluCI AATT 2 cut(s) 64, 86
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 2 cut(s) 21, 66
MspA1I CMGCKG 1 cut(s) 99
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 141
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 98, 101
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
SatI GCNGC 2 cut(s) 97, 100
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 1 cut(s) 180
SetI ASST 3 cut(s) 13, 41, 58
SgeI CNNG 4 cut(s) 17, 26, 32, 150
Sse9I AATT 2 cut(s) 64, 86
SsiI CCGC 2 cut(s) 43, 99
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 64, 86
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 50
TscAI CASTG 2 cut(s) 88, 109
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 3 cut(s) 63, 77, 170
TspRI CASTG 2 cut(s) 88, 109
XapI RAATTY 2 cut(s) 64, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.