Rh7BG212900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001095
Physical Location & Seq
Reverse (-)
18115809 .. 18120053
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG212900.1

Sequence Viewer

Length: 1884 bp
ATGGAGCATTCGAAGCAGAAACTCCAAACCTCCGATTCCCATATTCCGGGTTCTTCCTGCTCTCTCTCCATCCCTTCCGAACCTCCTGATCTAGGCAATTGGTTCTCAAGCTACCGCTATGAATCACCGGCAATGAATTCCAATTCTTTTCGCAATGAATTTGATACCGGCGAGATCAAAAGAGAAAAAGATGGAGGAGATTCATGTGGGTTTATGGAAAATGGAAATAAAGTTGGAGTCTTTGTTCATAAGAAGCAAAACTCAAATGGGGTTGTCAAATGTGGCAGCTCTTCACAAAACCAATGCTTAAGTAAGATTTCAGGTTCTTTTGAGTCACCTTCGTCCCTTTCAGAGCCTACGCACATCAAAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCATTGGATACAACTGCTGGTTTTGGCGATTCTCTTTGTAAAGAAAGTAAATTTGAGAAGGATGGGTTTTTGGTTGAAAACAGCAACAGAGAAAATGAAGAGGATTTGAGGAATTTTAGTACAAACAGCAGTGTTAGTAAAGAGATTGTGGGTGAGAAGGAACAGTCAGGAGGGCTTGCAAATTGTGACAGCTCTTGGAGAGATACTAAGCAGGCAAGTCAGCCTGTAAGTGAGGCTCCAGGTCCTCTGGAATCACATTTGCTCCTTTCAGAACCTATTCACATCAGAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCCTTGGATACGACTGATAGTTTTGGAGATTCTGTTTGCAAAGAAAGTAAATGTGAGAAGGATGGATTTAGGGTTGAAAAGAGAGATAATGAAGAGGATTTGGGGGATTTTAGAAGAAACAGTCGTGTTGGTGAAGAGGTTGCGGGAGAGAAGAAACAGTCAGCAGGGCTTGCAACATGTGACAGCTCTTGGAGAGTTACCAAGCATGATAGGCAGCCTGTAAGTAAGGTTCCGGGTCCTTTGGATTCCTCCTCACACTTGTCAGAGCCTACTGACATCAGAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTTGGATACAGCTGATGGTTTTGGAGATTTTGGTTGTAGAGATAGAATAGATGAGAAGGATGAGGTTTTGGTTGAACCCAGTAACAGAGAAGAGGGAGAGGGTTTGGAGGGTTTTAGTAAAAAGGAAAGTGATAGTGAAGAGGTTGATGTTGAGAAGGTTGTTGACCCAACCACTGGAGTAGATGAAAATCTATCTGGTCGGAATGATTTGTGTCTTGAATTTACACCTAAAACAGTGCAAAACCATGGTACCAGTCAAGCAAAACATGGTGCTACATCAAGCTTCAACAAAGGAGATTCTCAATGCAAGCGAGATCAAGAGACTTTCCATGGAACCAGATTTAAGCCATCGAACAAACAGAGAAGTATGTGCAGTAATGATGGCAAATGTCCACAAAACTTGATTCAGAGTAGCGGTTCCACTTTACAGGAGAGCTCAGAAGCAACGGTCCATGCAGAAGATTGTTTACAATTCAAAAGTGATTCAGAGTTAATTCCAGTTAAAGGAGCATCGGTAAGCAAATCAACTCATGGAAGCAAAGAAAGAAAGGATGGGGGAAAAGGAATATCAGAAGATGGTTTCATTACAACAAGGAAACGCAAATTTACAGCGAGAAATGATGAAAACTCTTCAAAAAGACCAGCAGAGAGTAGTAAGGGAACAGTTCCATTAGCAGGCGGAAAGGATGTTGCTATTAAAAGAAAGGCTTTAGCAGACACAACAAATTTTCATCATTCTCCAGCAACGATGATCACTGGGAAATGGAAGCGCCCTCAGCAACGTAAGCCAAATTTAAGACCTCCTTTGAAACAGCTTGGACTTGTGCAATGGATTCAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

627

Amino Acids

69.24

Weight (kDa)

5.68

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1286
AccB1I GGYRCC 1 cut(s) 1286
AccB7I CCANNNNNTGG 1 cut(s) 1211
AciI CCGC 4 cut(s) 115, 866, 1452, 1716
AcsI RAATTY 8 cut(s) 136, 158, 452, 514, 1256, 1640, 1762, 1828
AfaI GTAC 2 cut(s) 523, 1288
AfiI CCNNNNNNNGG 5 cut(s) 46, 92, 1211, 1541, 1712
AflII CTTAAG 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 899
AgsI TTSAA 8 cut(s) 479, 800, 1112, 1256, 1324, 1513, 1671, 1846
AjnI CCWGG 1 cut(s) 640
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
Alw21I GWGCWC 1 cut(s) 1475
Alw26I GTCTC 4 cut(s) 402, 723, 1038, 1352
AlwNI CAGNNNCTG 2 cut(s) 693, 1008
ApeKI GCWGC 2 cut(s) 285, 937
ApoI RAATTY 8 cut(s) 136, 158, 452, 514, 1256, 1640, 1762, 1828
Asp700I GAANNNNTTC 1 cut(s) 678
Asp718I GGTACC 1 cut(s) 1286
AspLEI GCGC 1 cut(s) 1809
AspS9I GGNCC 3 cut(s) 644, 959, 1486
AsuC2I CCSGG 2 cut(s) 48, 957
AsuHPI GGTGA 4 cut(s) 117, 327, 566, 866
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 3 cut(s) 644, 959, 1486
BaeI ACNNNNGTAYC 2 cut(s) 1270, 1303
BanI GGYRCC 1 cut(s) 1286
BanII GRGCYC 1 cut(s) 1475
BarI GAAGNNNNNNTAC 2 cut(s) 1488, 1520
Bbv12I GWGCWC 1 cut(s) 1475
BbvCI CCTCAGC 1 cut(s) 1812
BbvI GCAGC 2 cut(s) 297, 949
BccI CCATC 9 cut(s) 77, 185, 458, 779, 1046, 1393, 1412, 1583, 1607
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 3 cut(s) 403, 724, 1036
BclI TGATCA 1 cut(s) 1788
BcnI CCSGG 2 cut(s) 48, 957
BcoDI GTCTC 4 cut(s) 402, 723, 1038, 1352
BfaI CTAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 1810
BfrI CTTAAG 1 cut(s) 307
BfuI GTATCC 3 cut(s) 403, 724, 1036
BisI GCNGC 2 cut(s) 286, 938
BlsI GCNGC 2 cut(s) 287, 939
Bme1390I CCNGG 3 cut(s) 48, 642, 957
Bme18I GGWCC 3 cut(s) 644, 959, 1486
BmgT120I GGNCC 3 cut(s) 644, 959, 1486
BmiI GGNNCC 6 cut(s) 639, 954, 960, 1288, 1372, 1456
BmrFI CCNGG 3 cut(s) 48, 642, 957
BmrI ACTGGG 2 cut(s) 1110, 1803
BmsI GCATC 1 cut(s) 1556
BmuI ACTGGG 2 cut(s) 1110, 1803
BpmI CTGGAG 3 cut(s) 624, 1233, 1761
Bpu10I CCTNAGC 1 cut(s) 1812
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 4 cut(s) 91, 364, 685, 1000
BpuMI CCSGG 2 cut(s) 48, 957
BsaBI GATNNNNATC 1 cut(s) 1224
BsaJI CCNNGG 3 cut(s) 726, 1282, 1366
BsaXI ACNNNNNCTCC 8 cut(s) 228, 258, 648, 678, 741, 771, 1536, 1566
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 92, 1211, 1541, 1712
Bse118I RCCGGY 2 cut(s) 127, 167
Bse1I ACTGG 8 cut(s) 377, 698, 1013, 1116, 1216, 1290, 1535, 1798
Bse3DI GCAATG 3 cut(s) 138, 160, 1871
Bse8I GATNNNNATC 1 cut(s) 1224
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 3 cut(s) 726, 1282, 1366
BseGI GGATG 6 cut(s) 69, 469, 790, 1102, 1594, 1729
BseJI GATNNNNATC 1 cut(s) 1224
BseLI CCNNNNNNNGG 5 cut(s) 46, 92, 1211, 1541, 1712
BseMI GCAATG 3 cut(s) 138, 160, 1871
BseMII CTCAG 2 cut(s) 1488, 1826
BseNI ACTGG 8 cut(s) 377, 698, 1013, 1116, 1216, 1290, 1535, 1798
BseRI GAGGAG 2 cut(s) 210, 964
BseXI GCAGC 2 cut(s) 297, 949
BsgI GTGCAG 1 cut(s) 1429
BshNI GGYRCC 1 cut(s) 1286
BsiHKAI GWGCWC 1 cut(s) 1475
BsiSI CCGG 4 cut(s) 47, 128, 168, 956
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 5 cut(s) 46, 92, 1211, 1541, 1712
BsmAI GTCTC 4 cut(s) 402, 723, 1038, 1352
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 1475
Bsp143I GATC 4 cut(s) 88, 174, 1351, 1788
Bsp19I CCATGG 2 cut(s) 1282, 1366
BspACI CCGC 4 cut(s) 115, 866, 1452, 1716
BspCNI CTCAG 2 cut(s) 1487, 1825
BspLI GGNNCC 6 cut(s) 639, 954, 960, 1288, 1372, 1456
BspQI GCTCTTC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 1286
BspTI CTTAAG 1 cut(s) 307
BsrDI GCAATG 3 cut(s) 138, 160, 1871
BsrFI RCCGGY 2 cut(s) 127, 167
BsrI ACTGG 8 cut(s) 377, 698, 1013, 1116, 1216, 1290, 1535, 1798
BssAI RCCGGY 2 cut(s) 127, 167
BssECI CCNNGG 3 cut(s) 726, 1282, 1366
BssMI GATC 4 cut(s) 88, 174, 1351, 1788
BssT1I CCWWGG 3 cut(s) 726, 1282, 1366
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 6 cut(s) 567, 845, 882, 1273, 1486, 1702
Bst6I CTCTTC 7 cut(s) 295, 495, 810, 852, 1122, 1170, 1672
BstAFI CTTAAG 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 5 cut(s) 579, 615, 894, 1346, 1714
BstDEI CTNAG 3 cut(s) 609, 1474, 1812
BstDSI CCRYGG 2 cut(s) 1282, 1366
BstENI CCTNNNNNAGG 1 cut(s) 90
BstF5I GGATG 6 cut(s) 69, 469, 790, 1102, 1594, 1729
BstH2I RGCGCY 1 cut(s) 1810
BstHHI GCGC 1 cut(s) 1809
BstKTI GATC 4 cut(s) 91, 177, 1354, 1791
BstMAI GTCTC 4 cut(s) 402, 723, 1038, 1352
BstMBI GATC 4 cut(s) 88, 174, 1351, 1788
BstMWI GCNNNNNNNGC 5 cut(s) 13, 893, 934, 1813, 1822
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 1 cut(s) 903
BstSCI CCNGG 3 cut(s) 46, 640, 955
BstV1I GCAGC 2 cut(s) 297, 949
BsuI GTATCC 3 cut(s) 403, 724, 1036
BtgI CCRYGG 2 cut(s) 1282, 1366
BtsCI GGATG 6 cut(s) 69, 469, 790, 1102, 1594, 1729
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 4 cut(s) 538, 1209, 1278, 1791
Cac8I GCNNGC 5 cut(s) 579, 615, 894, 1346, 1714
CaiI CAGNNNCTG 2 cut(s) 693, 1008
CfoI GCGC 1 cut(s) 1809
Cfr10I RCCGGY 2 cut(s) 127, 167
Cfr13I GGNCC 3 cut(s) 644, 959, 1486
Csp6I GTAC 2 cut(s) 522, 1287
CspCI CAANNNNNGTGG 2 cut(s) 1419, 1454
CviAII CATG 8 cut(s) 204, 900, 929, 1283, 1304, 1367, 1490, 1568
CviQI GTAC 2 cut(s) 522, 1287
DdeI CTNAG 3 cut(s) 609, 1474, 1812
DpnI GATC 4 cut(s) 90, 176, 1353, 1790
DpnII GATC 4 cut(s) 88, 174, 1351, 1788
Eam1104I CTCTTC 7 cut(s) 295, 495, 810, 852, 1122, 1170, 1672
EarI CTCTTC 7 cut(s) 295, 495, 810, 852, 1122, 1170, 1672
EciI GGCGGA 1 cut(s) 1731
Ecl136II GAGCTC 1 cut(s) 1473
Eco130I CCWWGG 3 cut(s) 726, 1282, 1366
Eco24I GRGCYC 1 cut(s) 1475
Eco47I GGWCC 3 cut(s) 644, 959, 1486
Eco53kI GAGCTC 1 cut(s) 1473
EcoICRI GAGCTC 1 cut(s) 1473
EcoNI CCTNNNNNAGG 1 cut(s) 90
EcoO109I RGGNCCY 2 cut(s) 644, 959
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 3 cut(s) 726, 1282, 1366
EcoT38I GRGCYC 1 cut(s) 1475
ErhI CCWWGG 3 cut(s) 726, 1282, 1366
FaeI CATG 8 cut(s) 207, 903, 932, 1286, 1307, 1370, 1493, 1571
FalI AAGNNNNNCTT 4 cut(s) 1729, 1761, 1825, 1857
FaqI GGGAC 1 cut(s) 328
FatI CATG 8 cut(s) 203, 899, 928, 1282, 1303, 1366, 1489, 1567
FauI CCCGC 1 cut(s) 859
FbaI TGATCA 1 cut(s) 1788
Fnu4HI GCNGC 2 cut(s) 286, 938
FokI GGATG 6 cut(s) 56, 476, 797, 1109, 1601, 1736
FriOI GRGCYC 1 cut(s) 1475
Fsp4HI GCNGC 2 cut(s) 286, 938
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 1808
GluI GCNGC 2 cut(s) 286, 938
GsuI CTGGAG 3 cut(s) 624, 1233, 1761
HaeII RGCGCY 1 cut(s) 1810
HapII CCGG 4 cut(s) 47, 128, 168, 956
HhaI GCGC 1 cut(s) 1809
Hin1II CATG 8 cut(s) 207, 903, 932, 1286, 1307, 1370, 1493, 1571
Hin6I GCGC 1 cut(s) 1807
HinP1I GCGC 1 cut(s) 1807
HincII GTYRAC 1 cut(s) 1201
HindII GTYRAC 1 cut(s) 1201
HindIII AAGCTT 1 cut(s) 1318
HpaII CCGG 4 cut(s) 47, 128, 168, 956
HphI GGTGA 4 cut(s) 117, 327, 566, 866
Hpy166II GTNNAC 3 cut(s) 1201, 1430, 1505
Hpy188III TCNNGA 5 cut(s) 86, 570, 650, 1253, 1355
Hpy8I GTNNAC 3 cut(s) 1201, 1430, 1505
HpyAV CCTTC 9 cut(s) 84, 348, 411, 454, 553, 732, 775, 1087, 1186
HpyCH4III ACNGT 6 cut(s) 567, 845, 882, 1273, 1486, 1702
HpyCH4IV ACGT 1 cut(s) 1819
HpyCH4V TGCA 8 cut(s) 581, 762, 896, 1276, 1344, 1410, 1493, 1864
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 893, 934, 1813, 1822
HpyF3I CTNAG 3 cut(s) 609, 1474, 1812
HpySE526I ACGT 1 cut(s) 1819
Hsp92II CATG 8 cut(s) 207, 903, 932, 1286, 1307, 1370, 1493, 1571
HspAI GCGC 1 cut(s) 1807
KpnI GGTACC 1 cut(s) 1290
Ksp22I TGATCA 1 cut(s) 1788
Kzo9I GATC 4 cut(s) 88, 174, 1351, 1788
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 4 cut(s) 4, 643, 669, 1544
Lsp1109I GCAGC 2 cut(s) 297, 949
LweI GCATC 1 cut(s) 1556
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 1819
MaeIII GTNAC 5 cut(s) 333, 587, 902, 919, 1118
MalI GATC 4 cut(s) 90, 176, 1353, 1790
MboI GATC 4 cut(s) 88, 174, 1351, 1788
MfeI CAATTG 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 1475
MlyI GAGTC 5 cut(s) 246, 341, 404, 725, 1040
MmeI TCCRAC 2 cut(s) 214, 1217
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 6 cut(s) 308, 1380, 1529, 1539, 1734, 1832
MspA1I CMGCKG 1 cut(s) 1049
MspCI CTTAAG 1 cut(s) 307
MspI CCGG 4 cut(s) 47, 128, 168, 956
MspR9I CCNGG 3 cut(s) 48, 642, 957
MunI CAATTG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 5 cut(s) 13, 893, 934, 1813, 1822
NciI CCSGG 2 cut(s) 48, 957
NcoI CCATGG 2 cut(s) 1282, 1366
NdeII GATC 4 cut(s) 88, 174, 1351, 1788
NlaIII CATG 8 cut(s) 207, 903, 932, 1286, 1307, 1370, 1493, 1571
NlaIV GGNNCC 6 cut(s) 639, 954, 960, 1288, 1372, 1456
NmuCI GTSAC 3 cut(s) 333, 587, 902
NspI RCATGY 1 cut(s) 903
NspV TTCGAA 1 cut(s) 11
PciI ACATGT 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 295
PctI GAATGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 1211
PkrI GCNGC 2 cut(s) 287, 939
PleI GAGTC 5 cut(s) 245, 340, 403, 724, 1039
PpsI GAGTC 5 cut(s) 245, 340, 403, 724, 1039
PpuMI RGGWCCY 2 cut(s) 644, 959
PscI ACATGT 1 cut(s) 899
Psp124BI GAGCTC 1 cut(s) 1475
Psp5II RGGWCCY 2 cut(s) 644, 959
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 6 cut(s) 639, 954, 960, 1288, 1372, 1456
PspPI GGNCC 3 cut(s) 644, 959, 1486
PspPPI RGGWCCY 2 cut(s) 644, 959
PsrI GAACNNNNNNTAC 2 cut(s) 936, 968
PstNI CAGNNNCTG 2 cut(s) 693, 1008
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 2 cut(s) 523, 1288
RsaNI GTAC 2 cut(s) 522, 1287
SacI GAGCTC 1 cut(s) 1475
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 6 cut(s) 308, 1380, 1529, 1539, 1734, 1832
SatI GCNGC 2 cut(s) 286, 938
Sau3AI GATC 4 cut(s) 88, 174, 1351, 1788
Sau96I GGNCC 3 cut(s) 644, 959, 1486
SchI GAGTC 5 cut(s) 246, 341, 404, 725, 1040
ScrFI CCNGG 3 cut(s) 48, 642, 957
SduI GDGCHC 1 cut(s) 1475
SfaNI GCATC 1 cut(s) 1556
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 3 cut(s) 644, 959, 1486
SmlI CTYRAG 5 cut(s) 106, 307, 379, 700, 1015
SmoI CTYRAG 5 cut(s) 106, 307, 379, 700, 1015
SsiI CCGC 4 cut(s) 115, 866, 1452, 1716
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 1475
StyD4I CCNGG 3 cut(s) 46, 640, 955
StyI CCWWGG 3 cut(s) 726, 1282, 1366
TaaI ACNGT 6 cut(s) 567, 845, 882, 1273, 1486, 1702
TaiI ACGT 1 cut(s) 1822
TaqI TCGA 2 cut(s) 11, 1388
TatI WGTACW 1 cut(s) 521
Tru1I TTAA 6 cut(s) 308, 1380, 1529, 1539, 1734, 1832
Tru9I TTAA 6 cut(s) 308, 1380, 1529, 1539, 1734, 1832
TscAI CASTG 4 cut(s) 538, 1216, 1278, 1798
TseFI GTSAC 3 cut(s) 333, 587, 902
TseI GCWGC 2 cut(s) 285, 937
Tsp45I GTSAC 3 cut(s) 333, 587, 902
TspRI CASTG 4 cut(s) 538, 1216, 1278, 1798
Van91I CCANNNNNTGG 1 cut(s) 1211
Vha464I CTTAAG 1 cut(s) 307
VpaK11BI GGWCC 3 cut(s) 644, 959, 1486
XagI CCTNNNNNAGG 1 cut(s) 90
XapI RAATTY 8 cut(s) 136, 158, 452, 514, 1256, 1640, 1762, 1828
XceI RCATGY 1 cut(s) 903
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.