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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 136 |
| Acc36I | ACCTGC | 1 cut(s) | 136 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1274 |
| AciI | CCGC | 2 cut(s) | 115, 929 |
| AcsI | RAATTY | 8 cut(s) | 136, 158, 515, 577, 1319, 1703, 1825, 1891 |
| AfaI | GTAC | 1 cut(s) | 586 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 92, 1274, 1604, 1775 |
| AflII | CTTAAG | 1 cut(s) | 307 |
| AflIII | ACRYGT | 1 cut(s) | 962 |
| AgsI | TTSAA | 9 cut(s) | 322, 542, 863, 1175, 1319, 1387, 1576, 1734, 1909 |
| AjnI | CCWGG | 2 cut(s) | 90, 703 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 228, 260 |
| Alw21I | GWGCWC | 1 cut(s) | 1538 |
| Alw26I | GTCTC | 4 cut(s) | 465, 786, 1101, 1415 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 756, 1071 |
| AoxI | GGCC | 1 cut(s) | 328 |
| ApaI | GGGCCC | 1 cut(s) | 332 |
| ApeKI | GCWGC | 4 cut(s) | 285, 1000, 1790, 1912 |
| ApoI | RAATTY | 8 cut(s) | 136, 158, 515, 577, 1319, 1703, 1825, 1891 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 741 |
| AspLEI | GCGC | 1 cut(s) | 1872 |
| AspS9I | GGNCC | 6 cut(s) | 328, 329, 406, 707, 1022, 1549 |
| AsuC2I | CCSGG | 2 cut(s) | 48, 1020 |
| AsuHPI | GGTGA | 4 cut(s) | 117, 390, 629, 1382 |
| AsuII | TTCGAA | 1 cut(s) | 11 |
| AvaII | GGWCC | 4 cut(s) | 406, 707, 1022, 1549 |
| BaeGI | GKGCMC | 1 cut(s) | 332 |
| BanII | GRGCYC | 2 cut(s) | 332, 1538 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1551, 1583 |
| BbsI | GAAGAC | 1 cut(s) | 1197 |
| Bbv12I | GWGCWC | 1 cut(s) | 1538 |
| BbvCI | CCTCAGC | 1 cut(s) | 1875 |
| BbvI | GCAGC | 4 cut(s) | 297, 1012, 1777, 1924 |
| BccI | CCATC | 8 cut(s) | 77, 521, 842, 1109, 1456, 1475, 1646, 1670 |
| BciT130I | CCWGG | 2 cut(s) | 92, 705 |
| BciVI | GTATCC | 2 cut(s) | 466, 1099 |
| BclI | TGATCA | 1 cut(s) | 1851 |
| BcnI | CCSGG | 2 cut(s) | 48, 1020 |
| BcoDI | GTCTC | 4 cut(s) | 465, 786, 1101, 1415 |
| BfoI | RGCGCY | 1 cut(s) | 1873 |
| BfrI | CTTAAG | 1 cut(s) | 307 |
| BfuAI | ACCTGC | 1 cut(s) | 136 |
| BfuI | GTATCC | 2 cut(s) | 466, 1099 |
| BisI | GCNGC | 4 cut(s) | 286, 1001, 1791, 1913 |
| BlsI | GCNGC | 4 cut(s) | 287, 1002, 1792, 1914 |
| Bme1390I | CCNGG | 4 cut(s) | 48, 92, 705, 1020 |
| Bme18I | GGWCC | 4 cut(s) | 406, 707, 1022, 1549 |
| BmgT120I | GGNCC | 6 cut(s) | 328, 329, 406, 707, 1022, 1549 |
| BmiI | GGNNCC | 7 cut(s) | 330, 687, 702, 1017, 1023, 1435, 1519 |
| BmrFI | CCNGG | 4 cut(s) | 48, 92, 705, 1020 |
| BmrI | ACTGGG | 1 cut(s) | 1173 |
| BmsI | GCATC | 2 cut(s) | 1619, 1777 |
| BmuI | ACTGGG | 1 cut(s) | 1173 |
| BpiI | GAAGAC | 1 cut(s) | 1197 |
| BpmI | CTGGAG | 2 cut(s) | 687, 1296 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1875 |
| Bpu14I | TTCGAA | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 5 cut(s) | 91, 427, 748, 1063, 1943 |
| BpuMI | CCSGG | 2 cut(s) | 48, 1020 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1287 |
| BsaJI | CCNNGG | 3 cut(s) | 91, 789, 1429 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 228, 258, 711, 741, 804, 834, 1599, 1629 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 92, 1274, 1604, 1775 |
| Bse118I | RCCGGY | 2 cut(s) | 167, 368 |
| Bse1I | ACTGG | 8 cut(s) | 440, 761, 1076, 1179, 1279, 1353, 1598, 1861 |
| Bse3DI | GCAATG | 3 cut(s) | 138, 160, 1934 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1287 |
| BseBI | CCWGG | 2 cut(s) | 92, 705 |
| BseDI | CCNNGG | 3 cut(s) | 91, 789, 1429 |
| BseGI | GGATG | 6 cut(s) | 69, 532, 853, 1165, 1657, 1792 |
| BseJI | GATNNNNATC | 1 cut(s) | 1287 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 92, 1274, 1604, 1775 |
| BseMI | GCAATG | 3 cut(s) | 138, 160, 1934 |
| BseMII | CTCAG | 3 cut(s) | 53, 1551, 1889 |
| BseNI | ACTGG | 8 cut(s) | 440, 761, 1076, 1179, 1279, 1353, 1598, 1861 |
| BseRI | GAGGAG | 1 cut(s) | 210 |
| BseSI | GKGCMC | 1 cut(s) | 332 |
| BseXI | GCAGC | 4 cut(s) | 297, 1012, 1777, 1924 |
| BsgI | GTGCAG | 1 cut(s) | 1492 |
| BshFI | GGCC | 1 cut(s) | 330 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1538 |
| BsiSI | CCGG | 5 cut(s) | 47, 168, 369, 1019, 1841 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 92, 1274, 1604, 1775 |
| BsmAI | GTCTC | 4 cut(s) | 465, 786, 1101, 1415 |
| BsmI | GAATGC | 1 cut(s) | 7 |
| BsnI | GGCC | 1 cut(s) | 330 |
| Bsp119I | TTCGAA | 1 cut(s) | 11 |
| Bsp120I | GGGCCC | 1 cut(s) | 328 |
| Bsp1286I | GDGCHC | 2 cut(s) | 332, 1538 |
| Bsp143I | GATC | 3 cut(s) | 174, 1414, 1851 |
| Bsp19I | CCATGG | 1 cut(s) | 1429 |
| BspACI | CCGC | 2 cut(s) | 115, 929 |
| BspANI | GGCC | 1 cut(s) | 330 |
| BspCNI | CTCAG | 3 cut(s) | 52, 1550, 1888 |
| BspLI | GGNNCC | 7 cut(s) | 330, 687, 702, 1017, 1023, 1435, 1519 |
| BspMI | ACCTGC | 1 cut(s) | 136 |
| BspQI | GCTCTTC | 1 cut(s) | 295 |
| BspT104I | TTCGAA | 1 cut(s) | 11 |
| BspTI | CTTAAG | 1 cut(s) | 307 |
| BsrDI | GCAATG | 3 cut(s) | 138, 160, 1934 |
| BsrFI | RCCGGY | 2 cut(s) | 167, 368 |
| BsrI | ACTGG | 8 cut(s) | 440, 761, 1076, 1179, 1279, 1353, 1598, 1861 |
| BssAI | RCCGGY | 2 cut(s) | 167, 368 |
| BssECI | CCNNGG | 3 cut(s) | 91, 789, 1429 |
| BssMI | GATC | 3 cut(s) | 174, 1414, 1851 |
| BssT1I | CCWWGG | 2 cut(s) | 789, 1429 |
| Bst2UI | CCWGG | 2 cut(s) | 92, 705 |
| Bst4CI | ACNGT | 6 cut(s) | 630, 908, 945, 1336, 1549, 1765 |
| Bst6I | CTCTTC | 5 cut(s) | 295, 558, 873, 1233, 1735 |
| BstAFI | CTTAAG | 1 cut(s) | 307 |
| BstBI | TTCGAA | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 5 cut(s) | 642, 678, 957, 1409, 1777 |
| BstDEI | CTNAG | 4 cut(s) | 39, 672, 1537, 1875 |
| BstDSI | CCRYGG | 1 cut(s) | 1429 |
| BstF5I | GGATG | 6 cut(s) | 69, 532, 853, 1165, 1657, 1792 |
| BstH2I | RGCGCY | 1 cut(s) | 1873 |
| BstHHI | GCGC | 1 cut(s) | 1872 |
| BstKTI | GATC | 3 cut(s) | 177, 1417, 1854 |
| BstMAI | GTCTC | 4 cut(s) | 465, 786, 1101, 1415 |
| BstMBI | GATC | 3 cut(s) | 174, 1414, 1851 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 13, 997, 1876, 1885 |
| BstNI | CCWGG | 2 cut(s) | 92, 705 |
| BstNSI | RCATGY | 1 cut(s) | 966 |
| BstSCI | CCNGG | 4 cut(s) | 46, 90, 703, 1018 |
| BstSLI | GKGCMC | 1 cut(s) | 332 |
| BstV1I | GCAGC | 4 cut(s) | 297, 1012, 1777, 1924 |
| BstV2I | GAAGAC | 1 cut(s) | 1197 |
| BsuI | GTATCC | 2 cut(s) | 466, 1099 |
| BsuRI | GGCC | 1 cut(s) | 330 |
| BtgI | CCRYGG | 1 cut(s) | 1429 |
| BtsCI | GGATG | 6 cut(s) | 69, 532, 853, 1165, 1657, 1792 |
| BtsI | GCAGTG | 1 cut(s) | 601 |
| BtsIMutI | CAGTG | 5 cut(s) | 601, 913, 1272, 1341, 1854 |
| BveI | ACCTGC | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 5 cut(s) | 642, 678, 957, 1409, 1777 |
| CaiI | CAGNNNCTG | 2 cut(s) | 756, 1071 |
| CfoI | GCGC | 1 cut(s) | 1872 |
| Cfr10I | RCCGGY | 2 cut(s) | 167, 368 |
| Cfr13I | GGNCC | 6 cut(s) | 328, 329, 406, 707, 1022, 1549 |
| Csp6I | GTAC | 1 cut(s) | 585 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1482, 1517 |
| CviAII | CATG | 8 cut(s) | 204, 963, 992, 1346, 1367, 1430, 1553, 1631 |
| CviQI | GTAC | 1 cut(s) | 585 |
| DdeI | CTNAG | 4 cut(s) | 39, 672, 1537, 1875 |
| DpnI | GATC | 3 cut(s) | 176, 1416, 1853 |
| DpnII | GATC | 3 cut(s) | 174, 1414, 1851 |
| Eam1104I | CTCTTC | 5 cut(s) | 295, 558, 873, 1233, 1735 |
| EarI | CTCTTC | 5 cut(s) | 295, 558, 873, 1233, 1735 |
| Ecl136II | GAGCTC | 1 cut(s) | 1536 |
| Eco130I | CCWWGG | 2 cut(s) | 789, 1429 |
| Eco24I | GRGCYC | 2 cut(s) | 332, 1538 |
| Eco47I | GGWCC | 4 cut(s) | 406, 707, 1022, 1549 |
| Eco53kI | GAGCTC | 1 cut(s) | 1536 |
| EcoICRI | GAGCTC | 1 cut(s) | 1536 |
| EcoO109I | RGGNCCY | 3 cut(s) | 329, 707, 1022 |
| EcoRI | GAATTC | 1 cut(s) | 136 |
| EcoRII | CCWGG | 2 cut(s) | 90, 703 |
| EcoT14I | CCWWGG | 2 cut(s) | 789, 1429 |
| EcoT38I | GRGCYC | 2 cut(s) | 332, 1538 |
| ErhI | CCWWGG | 2 cut(s) | 789, 1429 |
| FaeI | CATG | 8 cut(s) | 207, 966, 995, 1349, 1370, 1433, 1556, 1634 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1792, 1824, 1888, 1920 |
| FatI | CATG | 8 cut(s) | 203, 962, 991, 1345, 1366, 1429, 1552, 1630 |
| FauI | CCCGC | 1 cut(s) | 922 |
| FbaI | TGATCA | 1 cut(s) | 1851 |
| Fnu4HI | GCNGC | 4 cut(s) | 286, 1001, 1791, 1913 |
| FokI | GGATG | 6 cut(s) | 56, 539, 860, 1172, 1664, 1799 |
| FriOI | GRGCYC | 2 cut(s) | 332, 1538 |
| Fsp4HI | GCNGC | 4 cut(s) | 286, 1001, 1791, 1913 |
| GlaI | GCGC | 1 cut(s) | 1871 |
| GluI | GCNGC | 4 cut(s) | 286, 1001, 1791, 1913 |
| GsuI | CTGGAG | 2 cut(s) | 687, 1296 |
| HaeII | RGCGCY | 1 cut(s) | 1873 |
| HaeIII | GGCC | 1 cut(s) | 330 |
| HapII | CCGG | 5 cut(s) | 47, 168, 369, 1019, 1841 |
| HhaI | GCGC | 1 cut(s) | 1872 |
| Hin1II | CATG | 8 cut(s) | 207, 966, 995, 1349, 1370, 1433, 1556, 1634 |
| Hin6I | GCGC | 1 cut(s) | 1870 |
| HinP1I | GCGC | 1 cut(s) | 1870 |
| HincII | GTYRAC | 1 cut(s) | 1264 |
| HindII | GTYRAC | 1 cut(s) | 1264 |
| HindIII | AAGCTT | 1 cut(s) | 1381 |
| HpaII | CCGG | 5 cut(s) | 47, 168, 369, 1019, 1841 |
| HphI | GGTGA | 4 cut(s) | 117, 390, 629, 1382 |
| Hpy166II | GTNNAC | 3 cut(s) | 1264, 1493, 1568 |
| Hpy188III | TCNNGA | 5 cut(s) | 86, 633, 713, 1316, 1418 |
| Hpy8I | GTNNAC | 3 cut(s) | 1264, 1493, 1568 |
| HpyAV | CCTTC | 9 cut(s) | 84, 411, 474, 517, 616, 795, 838, 1150, 1249 |
| HpyCH4III | ACNGT | 6 cut(s) | 630, 908, 945, 1336, 1549, 1765 |
| HpyCH4IV | ACGT | 1 cut(s) | 1882 |
| HpyCH4V | TGCA | 9 cut(s) | 131, 348, 644, 825, 959, 1339, 1407, 1473, 1556 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 13, 997, 1876, 1885 |
| HpyF3I | CTNAG | 4 cut(s) | 39, 672, 1537, 1875 |
| HpySE526I | ACGT | 1 cut(s) | 1882 |
| Hsp92II | CATG | 8 cut(s) | 207, 966, 995, 1349, 1370, 1433, 1556, 1634 |
| HspAI | GCGC | 1 cut(s) | 1870 |
| Ksp22I | TGATCA | 1 cut(s) | 1851 |
| Kzo9I | GATC | 3 cut(s) | 174, 1414, 1851 |
| LguI | GCTCTTC | 1 cut(s) | 295 |
| LmnI | GCTCC | 5 cut(s) | 4, 685, 706, 732, 1607 |
| Lsp1109I | GCAGC | 4 cut(s) | 297, 1012, 1777, 1924 |
| LweI | GCATC | 2 cut(s) | 1619, 1777 |
| MaeII | ACGT | 1 cut(s) | 1882 |
| MaeIII | GTNAC | 5 cut(s) | 396, 650, 965, 982, 1181 |
| MalI | GATC | 3 cut(s) | 176, 1416, 1853 |
| MboI | GATC | 3 cut(s) | 174, 1414, 1851 |
| MfeI | CAATTG | 1 cut(s) | 97 |
| MhlI | GDGCHC | 2 cut(s) | 332, 1538 |
| MlyI | GAGTC | 6 cut(s) | 246, 347, 404, 467, 788, 1103 |
| MmeI | TCCRAC | 1 cut(s) | 214 |
| MroXI | GAANNNNTTC | 1 cut(s) | 741 |
| MseI | TTAA | 6 cut(s) | 308, 1443, 1592, 1602, 1797, 1895 |
| MspA1I | CMGCKG | 1 cut(s) | 1112 |
| MspCI | CTTAAG | 1 cut(s) | 307 |
| MspI | CCGG | 5 cut(s) | 47, 168, 369, 1019, 1841 |
| MspR9I | CCNGG | 4 cut(s) | 48, 92, 705, 1020 |
| MunI | CAATTG | 1 cut(s) | 97 |
| Mva1269I | GAATGC | 1 cut(s) | 7 |
| MvaI | CCWGG | 2 cut(s) | 92, 705 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 13, 997, 1876, 1885 |
| NciI | CCSGG | 2 cut(s) | 48, 1020 |
| NcoI | CCATGG | 1 cut(s) | 1429 |
| NdeII | GATC | 3 cut(s) | 174, 1414, 1851 |
| NlaIII | CATG | 8 cut(s) | 207, 966, 995, 1349, 1370, 1433, 1556, 1634 |
| NlaIV | GGNNCC | 7 cut(s) | 330, 687, 702, 1017, 1023, 1435, 1519 |
| NmuCI | GTSAC | 3 cut(s) | 396, 650, 965 |
| NspI | RCATGY | 1 cut(s) | 966 |
| NspV | TTCGAA | 1 cut(s) | 11 |
| PaqCI | CACCTGC | 1 cut(s) | 136 |
| PciI | ACATGT | 1 cut(s) | 962 |
| PciSI | GCTCTTC | 1 cut(s) | 295 |
| PctI | GAATGC | 1 cut(s) | 7 |
| PdmI | GAANNNNTTC | 1 cut(s) | 741 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1274 |
| PkrI | GCNGC | 4 cut(s) | 287, 1002, 1792, 1914 |
| PleI | GAGTC | 6 cut(s) | 245, 346, 403, 466, 787, 1102 |
| PpsI | GAGTC | 6 cut(s) | 245, 346, 403, 466, 787, 1102 |
| PpuMI | RGGWCCY | 2 cut(s) | 707, 1022 |
| PscI | ACATGT | 1 cut(s) | 962 |
| Psp124BI | GAGCTC | 1 cut(s) | 1538 |
| Psp5II | RGGWCCY | 2 cut(s) | 707, 1022 |
| Psp6I | CCWGG | 2 cut(s) | 90, 703 |
| PspGI | CCWGG | 2 cut(s) | 90, 703 |
| PspN4I | GGNNCC | 7 cut(s) | 330, 687, 702, 1017, 1023, 1435, 1519 |
| PspOMI | GGGCCC | 1 cut(s) | 328 |
| PspPI | GGNCC | 6 cut(s) | 328, 329, 406, 707, 1022, 1549 |
| PspPPI | RGGWCCY | 2 cut(s) | 707, 1022 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 999, 1031 |
| PstNI | CAGNNNCTG | 2 cut(s) | 756, 1071 |
| PvuII | CAGCTG | 1 cut(s) | 1112 |
| RsaI | GTAC | 1 cut(s) | 586 |
| RsaNI | GTAC | 1 cut(s) | 585 |
| SacI | GAGCTC | 1 cut(s) | 1538 |
| SapI | GCTCTTC | 1 cut(s) | 295 |
| SaqAI | TTAA | 6 cut(s) | 308, 1443, 1592, 1602, 1797, 1895 |
| SatI | GCNGC | 4 cut(s) | 286, 1001, 1791, 1913 |
| Sau3AI | GATC | 3 cut(s) | 174, 1414, 1851 |
| Sau96I | GGNCC | 6 cut(s) | 328, 329, 406, 707, 1022, 1549 |
| SchI | GAGTC | 6 cut(s) | 246, 347, 404, 467, 788, 1103 |
| ScrFI | CCNGG | 4 cut(s) | 48, 92, 705, 1020 |
| SduI | GDGCHC | 2 cut(s) | 332, 1538 |
| SfaNI | GCATC | 2 cut(s) | 1619, 1777 |
| SfuI | TTCGAA | 1 cut(s) | 11 |
| SinI | GGWCC | 4 cut(s) | 406, 707, 1022, 1549 |
| SmlI | CTYRAG | 6 cut(s) | 106, 307, 442, 763, 1078, 1922 |
| SmoI | CTYRAG | 6 cut(s) | 106, 307, 442, 763, 1078, 1922 |
| SsiI | CCGC | 2 cut(s) | 115, 929 |
| SstI | GAGCTC | 1 cut(s) | 1538 |
| StyD4I | CCNGG | 4 cut(s) | 46, 90, 703, 1018 |
| StyI | CCWWGG | 2 cut(s) | 789, 1429 |
| TaaI | ACNGT | 6 cut(s) | 630, 908, 945, 1336, 1549, 1765 |
| TaiI | ACGT | 1 cut(s) | 1885 |
| TaqI | TCGA | 2 cut(s) | 11, 1451 |
| TaqII | GACCGA | 1 cut(s) | 394 |
| TatI | WGTACW | 1 cut(s) | 584 |
| Tru1I | TTAA | 6 cut(s) | 308, 1443, 1592, 1602, 1797, 1895 |
| Tru9I | TTAA | 6 cut(s) | 308, 1443, 1592, 1602, 1797, 1895 |
| TscAI | CASTG | 5 cut(s) | 601, 913, 1279, 1341, 1861 |
| TseFI | GTSAC | 3 cut(s) | 396, 650, 965 |
| TseI | GCWGC | 4 cut(s) | 285, 1000, 1790, 1912 |
| Tsp45I | GTSAC | 3 cut(s) | 396, 650, 965 |
| TspGWI | ACGGA | 3 cut(s) | 207, 331, 1209 |
| TspRI | CASTG | 5 cut(s) | 601, 913, 1279, 1341, 1861 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1274 |
| Vha464I | CTTAAG | 1 cut(s) | 307 |
| VpaK11BI | GGWCC | 4 cut(s) | 406, 707, 1022, 1549 |
| XapI | RAATTY | 8 cut(s) | 136, 158, 515, 577, 1319, 1703, 1825, 1891 |
| XceI | RCATGY | 1 cut(s) | 966 |
| XmnI | GAANNNNTTC | 1 cut(s) | 741 |