Rh4CG009000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001095
Physical Location & Seq
Reverse (-)
1584829 .. 1588588
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG009000.1

Sequence Viewer

Length: 480 bp
ATGAGTAGTTTTCTGGAAATCAACGATACCAAGATTGCAGTTTTGATTTGCATACCAGAGGTTGTGGGTGAGAAGAAACGGTCAGGAGGGCTTGCAAATTGTGACAGCTCTTCGAGAGATACTAAGCAGACAAGGCAGACTCTAAGTGAGGCTCCAGGTCCTGTGGAATCACTTTTGCTCCTTTCAGAATGTAAATGTAAGGATGGATTCATGGTTGAAAATAACAAGAGAGATAATGAAGAGGATTTGGGGGATTTTAGAAGAAAGAGTTGTGTTGGTGAAGAGGTTGTGGGAGAGAAGAAACAGTCAGTATGGCTTGCAATATGTGACAGCTCTTGGAGAGATACCAAGCATGGTAGCAGCCTGTTCCAGGTCCTTTGGATTCCTCTTCACACTAGTCAGAGCCAACTGGCATCAGAAACTGGTTCTCAAGCTATGTTTATGAGTCTCCGTCTTTGGATACAGCTGATGGTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.82

Weight (kDa)

5.46

Isoelectric Point (pI)

67.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 1 cut(s) 218
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 2 cut(s) 154, 369
AluBI AGCT 4 cut(s) 108, 333, 434, 466
AluI AGCT 4 cut(s) 108, 333, 434, 466
Alw26I GTCTC 1 cut(s) 452
AlwNI CAGNNNCTG 2 cut(s) 161, 422
ApeKI GCWGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 158, 373
AsuHPI GGTGA 2 cut(s) 80, 290
AvaII GGWCC 2 cut(s) 158, 373
BbvI GCAGC 1 cut(s) 372
BccI CCATC 2 cut(s) 197, 463
BciT130I CCWGG 2 cut(s) 156, 371
BciVI GTATCC 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 452
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 1 cut(s) 396
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 156, 371
Bme18I GGWCC 2 cut(s) 158, 373
BmgT120I GGNCC 2 cut(s) 158, 373
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 2 cut(s) 156, 371
BmsI GCATC 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 414, 427
BseBI CCWGG 2 cut(s) 156, 371
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 414, 427
BseXI GCAGC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 115
BsrI ACTGG 2 cut(s) 414, 427
Bst2UI CCWGG 2 cut(s) 156, 371
Bst4CI ACNGT 2 cut(s) 81, 306
Bst6I CTCTTC 4 cut(s) 115, 234, 276, 393
BstC8I GCNNGC 2 cut(s) 93, 318
BstDEI CTNAG 2 cut(s) 123, 143
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 452
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 2 cut(s) 156, 371
BstSCI CCNGG 2 cut(s) 154, 369
BstV1I GCAGC 1 cut(s) 372
BsuI GTATCC 1 cut(s) 453
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 93, 318
CaiI CAGNNNCTG 2 cut(s) 161, 422
Cfr13I GGNCC 2 cut(s) 158, 373
CviAII CATG 2 cut(s) 211, 353
CviJI RGCY 9 cut(s) 91, 108, 152, 316, 333, 363, 405, 434, 466
CviKI_1 RGCY 9 cut(s) 91, 108, 152, 316, 333, 363, 405, 434, 466
DdeI CTNAG 2 cut(s) 123, 143
Eam1104I CTCTTC 4 cut(s) 115, 234, 276, 393
EarI CTCTTC 4 cut(s) 115, 234, 276, 393
Eco47I GGWCC 2 cut(s) 158, 373
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoO109I RGGNCCY 2 cut(s) 158, 373
EcoRII CCWGG 2 cut(s) 154, 369
FaeI CATG 2 cut(s) 214, 356
FaiI YATR 7 cut(s) 53, 212, 313, 325, 354, 437, 443
FatI CATG 2 cut(s) 210, 352
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 138
Hin1II CATG 2 cut(s) 214, 356
HinfI GANTC 5 cut(s) 139, 167, 207, 382, 445
HphI GGTGA 2 cut(s) 80, 290
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 187, 402, 418
Hpy188III TCNNGA 3 cut(s) 14, 84, 114
Hpy8I GTNNAC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 81, 306
HpyCH4V TGCA 4 cut(s) 38, 51, 95, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 123, 143
Hsp92II CATG 2 cut(s) 214, 356
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 157, 183
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 1 cut(s) 422
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 101, 326
MboII GAAGA 7 cut(s) 85, 102, 251, 273, 293, 310, 380
MluCI AATT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 133, 454
MnlI CCTC 6 cut(s) 52, 80, 142, 235, 277, 396
MspA1I CMGCKG 1 cut(s) 466
MspR9I CCNGG 2 cut(s) 156, 371
MvaI CCWGG 2 cut(s) 156, 371
MwoI GCNNNNNNNGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 214, 356
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 101, 326
PciSI GCTCTTC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 167, 207, 382
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 2 cut(s) 133, 453
PpsI GAGTC 2 cut(s) 133, 453
PpuMI RGGWCCY 2 cut(s) 158, 373
Psp5II RGGWCCY 2 cut(s) 158, 373
Psp6I CCWGG 2 cut(s) 154, 369
PspGI CCWGG 2 cut(s) 154, 369
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 2 cut(s) 158, 373
PspPPI RGGWCCY 2 cut(s) 158, 373
PstNI CAGNNNCTG 2 cut(s) 161, 422
PvuII CAGCTG 1 cut(s) 466
SapI GCTCTTC 1 cut(s) 115
SatI GCNGC 1 cut(s) 361
Sau96I GGNCC 2 cut(s) 158, 373
SchI GAGTC 2 cut(s) 133, 454
ScrFI CCNGG 2 cut(s) 156, 371
SetI ASST 8 cut(s) 63, 110, 160, 288, 335, 375, 436, 468
SfaNI GCATC 1 cut(s) 422
SinI GGWCC 2 cut(s) 158, 373
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 1 cut(s) 97
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 154, 369
TaaI ACNGT 2 cut(s) 81, 306
TaqI TCGA 1 cut(s) 113
TasI AATT 1 cut(s) 97
TfiI GAWTC 3 cut(s) 167, 207, 382
TseFI GTSAC 2 cut(s) 101, 326
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 2 cut(s) 101, 326
TspDTI ATGAA 2 cut(s) 199, 252
TspGWI ACGGA 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 158, 373
XagI CCTNNNNNAGG 1 cut(s) 368
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.