Rw4G000190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001095
Physical Location & Seq
Forward (+)
315936 .. 336694
20759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000190.1

Sequence Viewer

Length: 999 bp
ATGAATTCCAATCGTTTTCGCAGTGAATTCGATGGCAGCGGCAGTGAAACAGAAAGAGAAAAAGAAGAAGGAAAATCATGTGGGTTTATTGGAAATGGAAATAAAGTTGGAGTCTTTCCTACGCATATCAAAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCATTGGATACAACTGATGGTTTTGGCGATTCTTTTTGCAAAGAAAGTAAATGCGAGAAGGCTAGGTTTTTGGTTGAAAACAACAAGAGAGAAAATGAAGAGGATTTGAGGAATTTTAGTATAAAGAGCAGTGTCAGTAAAGAGGTTGTGGGTGAGAAGAAACGGTCAGGAGGGCTTGCAAATTGTGACAGCTCATCGACAGATACTAAGCAGACAAGGCAGACTCTAAGTGAGGTTCCAGGTCCTTTGGATTCCTCTTCACACTTGTCAGAGCCTACTGACATCAGAAACTGGTTCTCTAGCTATGTGTATGAGTCTCTGTCTTTGAATACAGCTGATGCTTCTGGAGATTTTGTTTGTAGAGATAGAATAGATGAGAAGGATGAGGTTTTGGTTGAACCCAGCAACAGAGAAGAAGGAGAGGGTTTGGAGGGATTTCGTAAAAAGGAAAGAGATGGTGAAGAGGTTGATGTTGAGAAGGTACAGTCAGAAGAGTTCGCAAAATATAACACCTCTTGCAGACATAGTCAAAGAAATAAGACGAGGGAAAAGGATCATCAGAAGATGGTTTCAATTACAACAAGGAAACGCAAATTTGCAGCAACAAATGATGAAAACTCTTCAAAAAGACCACCAGAGAGTGGTAAAGGAACAGTTCAATTAGCAGGCGGAGAGGATGTTATTAAAAGAAAGGCTTTAGCCGAGACAACAAATATTCATCATTCTCCGGCAAAGATGATCACTGGGAAATGGAAGTGCCCTCAGCAACATAAGCCAAATTTAGGACCTCCTTTGAAGCAGCTTGGACTTGAGCAAAGGATTCACAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.4

Weight (kDa)

6.74

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 806
AciI CCGC 2 cut(s) 39, 834
AclWI GGATC 1 cut(s) 726
AcsI RAATTY 5 cut(s) 4, 26, 277, 758, 943
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 2 cut(s) 806, 947
AgsI TTSAA 7 cut(s) 242, 493, 563, 738, 789, 824, 961
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 5 cut(s) 147, 357, 468, 500, 967
AluI AGCT 5 cut(s) 147, 357, 468, 500, 967
Alw26I GTCTC 3 cut(s) 165, 486, 863
AlwI GGATC 1 cut(s) 726
AlwNI CAGNNNCTG 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 36, 764, 964
ApoI RAATTY 5 cut(s) 4, 26, 277, 758, 943
AspS9I GGNCC 2 cut(s) 407, 950
AsuHPI GGTGA 2 cut(s) 329, 635
AvaII GGWCC 2 cut(s) 407, 950
BaeGI GKGCMC 1 cut(s) 926
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 3 cut(s) 48, 776, 976
BccI CCATC 4 cut(s) 26, 176, 614, 724
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 1 cut(s) 166
BclI TGATCA 1 cut(s) 903
BcoDI GTCTC 3 cut(s) 165, 486, 863
BfaI CTAG 2 cut(s) 228, 465
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 4 cut(s) 37, 40, 765, 965
BlsI GCNGC 4 cut(s) 38, 41, 766, 966
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 2 cut(s) 407, 950
BmgT120I GGNCC 2 cut(s) 407, 950
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 405
BmrI ACTGGG 1 cut(s) 918
BmsI GCATC 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 918
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 927
BpuEI CTTGAG 2 cut(s) 127, 995
BsaXI ACNNNNNCTCC 4 cut(s) 504, 534, 828, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 806, 947
Bse1I ACTGG 3 cut(s) 140, 461, 913
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 2 cut(s) 553, 847
BseLI CCNNNNNNNGG 2 cut(s) 806, 947
BseMII CTCAG 1 cut(s) 941
BseNI ACTGG 3 cut(s) 140, 461, 913
BseSI GKGCMC 1 cut(s) 926
BseXI GCAGC 3 cut(s) 48, 776, 976
BseYI CCCAGC 1 cut(s) 566
BsiSI CCGG 1 cut(s) 893
BslI CCNNNNNNNGG 2 cut(s) 806, 947
BsmAI GTCTC 3 cut(s) 165, 486, 863
Bsp1286I GDGCHC 1 cut(s) 926
Bsp143I GATC 2 cut(s) 718, 903
BspACI CCGC 2 cut(s) 39, 834
BspCNI CTCAG 1 cut(s) 940
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 1 cut(s) 726
BsrI ACTGG 3 cut(s) 140, 461, 913
BssMI GATC 2 cut(s) 718, 903
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 330, 651, 820
Bst6I CTCTTC 5 cut(s) 258, 427, 621, 651, 790
BstC8I GCNNGC 2 cut(s) 342, 832
BstDEI CTNAG 3 cut(s) 372, 392, 927
BstF5I GGATG 2 cut(s) 553, 847
BstKTI GATC 2 cut(s) 721, 906
BstMAI GTCTC 3 cut(s) 165, 486, 863
BstMBI GATC 2 cut(s) 718, 903
BstMWI GCNNNNNNNGC 2 cut(s) 382, 937
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 926
BstV1I GCAGC 3 cut(s) 48, 776, 976
BsuI GTATCC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 553, 847
BtsI GCAGTG 3 cut(s) 28, 49, 301
BtsIMutI CAGTG 4 cut(s) 28, 49, 301, 906
Cac8I GCNNGC 2 cut(s) 342, 832
CaiI CAGNNNCTG 1 cut(s) 456
Cfr13I GGNCC 2 cut(s) 407, 950
Csp6I GTAC 1 cut(s) 647
CviAII CATG 1 cut(s) 78
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 3 cut(s) 372, 392, 927
DpnI GATC 2 cut(s) 720, 905
DpnII GATC 2 cut(s) 718, 903
Eam1104I CTCTTC 5 cut(s) 258, 427, 621, 651, 790
EarI CTCTTC 5 cut(s) 258, 427, 621, 651, 790
EciI GGCGGA 1 cut(s) 849
Eco47I GGWCC 2 cut(s) 407, 950
EcoO109I RGGNCCY 2 cut(s) 407, 950
EcoRI GAATTC 2 cut(s) 4, 26
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 81
FalI AAGNNNNNCTT 2 cut(s) 844, 876
FatI CATG 1 cut(s) 77
FbaI TGATCA 1 cut(s) 903
Fnu4HI GCNGC 4 cut(s) 37, 40, 765, 965
FokI GGATG 2 cut(s) 560, 854
Fsp4HI GCNGC 4 cut(s) 37, 40, 765, 965
FspBI CTAG 2 cut(s) 228, 465
GluI GCNGC 4 cut(s) 37, 40, 765, 965
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 531
HapII CCGG 1 cut(s) 893
Hin1II CATG 1 cut(s) 81
HinfI GANTC 7 cut(s) 111, 158, 194, 388, 416, 479, 985
HpaII CCGG 1 cut(s) 893
HphI GGTGA 2 cut(s) 329, 635
Hpy188I TCNGA 4 cut(s) 436, 452, 655, 726
Hpy188III TCNNGA 2 cut(s) 333, 510
HpyAV CCTTC 6 cut(s) 62, 174, 217, 538, 575, 637
HpyCH4III ACNGT 3 cut(s) 330, 651, 820
HpyCH4V TGCA 4 cut(s) 204, 344, 684, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 937
HpyF3I CTNAG 3 cut(s) 372, 392, 927
Hsp92II CATG 1 cut(s) 81
Ksp22I TGATCA 1 cut(s) 903
Kzo9I GATC 2 cut(s) 718, 903
Lsp1109I GCAGC 3 cut(s) 48, 776, 976
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 228, 465
MaeIII GTNAC 1 cut(s) 350
MalI GATC 2 cut(s) 720, 905
MboI GATC 2 cut(s) 718, 903
MboII GAAGA 9 cut(s) 77, 275, 334, 414, 590, 638, 668, 739, 777
MhlI GDGCHC 1 cut(s) 926
MluCI AATT 8 cut(s) 4, 26, 277, 346, 738, 758, 824, 943
MlyI GAGTC 4 cut(s) 120, 167, 382, 488
MmeI TCCRAC 1 cut(s) 88
MseI TTAA 1 cut(s) 849
MspA1I CMGCKG 2 cut(s) 39, 500
MspI CCGG 1 cut(s) 893
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 382, 937
NdeII GATC 2 cut(s) 718, 903
NlaIII CATG 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 402
NmeAIII GCCGAG 1 cut(s) 892
NmuCI GTSAC 1 cut(s) 350
PfeI GAWTC 3 cut(s) 194, 416, 985
PflFI GACNNNGTC 1 cut(s) 690
PflMI CCANNNNNTGG 1 cut(s) 806
PkrI GCNGC 4 cut(s) 38, 41, 766, 966
PleI GAGTC 4 cut(s) 119, 166, 382, 487
PpsI GAGTC 4 cut(s) 119, 166, 382, 487
PpuMI RGGWCCY 2 cut(s) 407, 950
Psp5II RGGWCCY 2 cut(s) 407, 950
Psp6I CCWGG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 407, 950
PspPPI RGGWCCY 2 cut(s) 407, 950
PstNI CAGNNNCTG 1 cut(s) 456
PsyI GACNNNGTC 1 cut(s) 690
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 4 cut(s) 37, 40, 765, 965
Sau3AI GATC 2 cut(s) 718, 903
Sau96I GGNCC 2 cut(s) 407, 950
SchI GAGTC 4 cut(s) 120, 167, 382, 488
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 926
SfaNI GCATC 1 cut(s) 493
SinI GGWCC 2 cut(s) 407, 950
SmlI CTYRAG 2 cut(s) 142, 974
SmoI CTYRAG 2 cut(s) 142, 974
Sse9I AATT 8 cut(s) 4, 26, 277, 346, 738, 758, 824, 943
SsiI CCGC 2 cut(s) 39, 834
SspI AATATT 1 cut(s) 880
SspMI CTAG 2 cut(s) 228, 465
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 3 cut(s) 330, 651, 820
TaqI TCGA 2 cut(s) 30, 362
TasI AATT 8 cut(s) 4, 26, 277, 346, 738, 758, 824, 943
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 3 cut(s) 194, 416, 985
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 4 cut(s) 28, 49, 301, 913
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 3 cut(s) 36, 764, 964
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 5 cut(s) 17, 156, 276, 792, 872
TspRI CASTG 4 cut(s) 28, 49, 301, 913
Tth111I GACNNNGTC 1 cut(s) 690
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 407, 950
XapI RAATTY 5 cut(s) 4, 26, 277, 758, 943
XspI CTAG 2 cut(s) 228, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.