Rh4DG007700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001095
Physical Location & Seq
Reverse (-)
1288519 .. 1291171
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG007700.1

Sequence Viewer

Length: 561 bp
ATGATGAGGTTGTCAAATGTGGCAGCTCTTCACAAAACCAATGCTCAAGTTAAGATTTCAGGTTCTTCGGAGTCACTTCCGTCCCTTTCAGAGCCTACGCATATCAAAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCATTGGATACAACTGATGGTTTTGGCGATTCTTTTTGCAAAGAAAGTAAATGCGAGAAGGCTAGGTTTTTGGTTGAAAACAACAAGAGAGAAAATGAAGAGGATTTGAGGAATTTTAGTATAAAGAGCAGTGTCAGTAAAGAGGTTGTGGGTGAGAAGAAACGGTCAGGAGGGCTTGCAAATTGTGACAGCTCTTCGAGAGATACTAAGCAGACAAGGCAGACTCTAAGTGAGGCTCCAGGTCCTGTGGAATCACTTTTGCTCCTTTCAGAATGTAAATGTAAGGATGGATTCATGGTTGAAAATAACAAGAGAGATAATGAAGAGGATTTGGGGGATTTTAGAAGAAAGAGTTGTGTTGGTGAAGAGGTTGTGGGAGAGAAGAAACAGTCAGTATGGCTTGCAAGTTGCAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.75

Weight (kDa)

5.85

Isoelectric Point (pI)

64.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 253
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 218, 443
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 3 cut(s) 26, 123, 333
AluI AGCT 3 cut(s) 26, 123, 333
Alw26I GTCTC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 305, 515
AvaII GGWCC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 152, 422
BciT130I CCWGG 1 cut(s) 381
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 204
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 30, 103
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 433
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 35
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 378
BspQI GCTCTTC 2 cut(s) 33, 340
BsrI ACTGG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 306, 531
Bst6I CTCTTC 5 cut(s) 33, 234, 340, 459, 501
BstC8I GCNNGC 2 cut(s) 318, 543
BstDEI CTNAG 2 cut(s) 348, 368
BstF5I GGATG 1 cut(s) 433
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 35
BsuI GTATCC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 318, 543
CaiI CAGNNNCTG 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 383
CviAII CATG 2 cut(s) 436, 556
CviJI RGCY 8 cut(s) 26, 94, 123, 203, 316, 333, 377, 541
CviKI_1 RGCY 8 cut(s) 26, 94, 123, 203, 316, 333, 377, 541
DdeI CTNAG 2 cut(s) 348, 368
Eam1104I CTCTTC 5 cut(s) 33, 234, 340, 459, 501
EarI CTCTTC 5 cut(s) 33, 234, 340, 459, 501
Eco47I GGWCC 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 439, 559
FaiI YATR 7 cut(s) 102, 126, 132, 263, 437, 538, 557
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 435, 555
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 363
Hin1II CATG 2 cut(s) 439, 559
HinfI GANTC 6 cut(s) 71, 134, 170, 364, 392, 432
HphI GGTGA 2 cut(s) 305, 515
Hpy188I TCNGA 3 cut(s) 70, 91, 412
Hpy188III TCNNGA 2 cut(s) 309, 339
HpyAV CCTTC 2 cut(s) 150, 193
HpyCH4III ACNGT 2 cut(s) 306, 531
HpyCH4V TGCA 4 cut(s) 180, 320, 545, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 2 cut(s) 348, 368
Hsp92II CATG 2 cut(s) 439, 559
LguI GCTCTTC 2 cut(s) 33, 340
LmnI GCTCC 2 cut(s) 382, 408
LpnPI CCDG 6 cut(s) 45, 97, 294, 366, 393, 399
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 72, 326
MboII GAAGA 9 cut(s) 20, 57, 251, 310, 327, 476, 498, 518, 535
MluCI AATT 2 cut(s) 253, 322
MlyI GAGTC 3 cut(s) 80, 143, 358
MnlI CCTC 7 cut(s) 235, 243, 277, 305, 367, 460, 502
MseI TTAA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 358
NlaIII CATG 2 cut(s) 439, 559
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 2 cut(s) 72, 326
NspI RCATGY 1 cut(s) 559
PciI ACATGT 1 cut(s) 555
PciSI GCTCTTC 2 cut(s) 33, 340
PfeI GAWTC 3 cut(s) 170, 392, 432
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 3 cut(s) 79, 142, 358
PpsI GAGTC 3 cut(s) 79, 142, 358
PpuMI RGGWCCY 1 cut(s) 383
PscI ACATGT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 383
PspPPI RGGWCCY 1 cut(s) 383
PstNI CAGNNNCTG 1 cut(s) 386
SapI GCTCTTC 2 cut(s) 33, 340
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 3 cut(s) 80, 143, 358
ScrFI CCNGG 1 cut(s) 381
SetI ASST 9 cut(s) 11, 28, 64, 125, 209, 288, 335, 385, 513
SinI GGWCC 1 cut(s) 383
SmlI CTYRAG 2 cut(s) 45, 118
SmoI CTYRAG 2 cut(s) 45, 118
Sse9I AATT 2 cut(s) 253, 322
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 306, 531
TaqI TCGA 1 cut(s) 338
TasI AATT 2 cut(s) 253, 322
TfiI GAWTC 3 cut(s) 170, 392, 432
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 72, 326
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 72, 326
TspDTI ATGAA 4 cut(s) 132, 252, 424, 477
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 559
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.