Rroxscaffold_3G00252850

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
46920268 .. 46924733
4466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252850.1

Sequence Viewer

Length: 1815 bp
ATGAATTCCAATTCTTTTCGCAATGAATTTGATGCCGGCGAGATCAAAACAGAAAAAGATGGAGGAGATTCATGTGGGTTTATGGAAAATGGAAATAAAGTTGGAGTCTTTGTTCATAAGAAGCAGAACTCAAATGAGGTTGTCATATGTGGCAGCTCTTCACAAAACCAATGTTTAAGTAAGCTATTCAAGTTAGGTCCTGTGCAGTCCGTTTGCATATCTGAAGGTTCTGATACCGGCAAAGAGATTTCAGGTTCTTTTGAGTCACCTTCGTCCCTTTCAGAGCCTACGCACATCAAAAACTGGTTCTCAAGCTATGTGCATGAGTCTCCTTCATTGGATACAACTGCTGGTTTTGGTGATTCTCTTTGTAAAGAAAGTAAATTTGAAAAGGATGGGTTTTTGGTTGAAAATAGCAACAGAGAAAATGAAGAGGATTTGAGGAATTTTAGTACAAACAGCAGTGTTAGTAAAGAGATTGTGGGTGAGAAGGAACAGTCAGGAGGGCTTGCAAATTGTGACAGCTCTTGGAGGGATACTAAGCAGGCAAGGCAGCCTGTAAGTGAGGCTCCAGGTCCTCTGGAATCACATTTGCTCCTTTCAGAACCTATTCACATCAGAAACTGGTTCTCAAGCTATGCGTATGAGTCTCCTTCCTTGGATACGACTGATAGTTTCGGAGATTCTGTTTGCAAAGAAAGTAAATGTGAGAAGGATGGATTTAGGGTTGAAAAGAGAGATAATGAAGAGGATTTGGGGGATTTTAGAAGAAACAGTTGTGTTGGTGAAGAGTTTGCAGGAGAGAAGAAACAGTCAGCAGGGCTTGCAACATGTGACAACTCTTGGAGAGTTACCAAGCATGATAGGCAGCCTGTAAGTAAGGTTCCGGGTCCTTTGGATTCCTCTTCACACTTGTCAGAGCCTACTGACATCAGAAACTGGTTCTCAAGCTATGTGTATGAGTCTCCTTCTTTGGATACAGCTGATGGTTTTGGAGATTTTGGTTGTAGAGATAGAATAGAAGAGAAGGATGAGGTTTTGGTTGAACCCAGTAACAGAGAAGAGGGAGAGCGTTTGGAGGGTTTTAGTAAAAAGGAAAGTGATAGTGAAGAGGTTGATGTTGAGAAGGTTGTTGACCCAACCACTGGAGTAGATGAAAATCTATCTGGTCGGAATGATTTGTGTCTTGAATTTACACCTAAAACAGTGCAAAACCATGGTAGTCAAGCAAAACATGGTGATACATCAAGCTTCAACAAAGGAGATTCTCAATGCAAGCGAGATCAAGAGACTTTCCATGGAACCAGATTTAAGCCATCGAACAAACAGAGAAGTATGTGCAGTAATGATGGCAAATGTCCACAAAACTTGATTCAGAGTAGCGGTTCCACTTTACAGGAGAGCTCAGAAGCAACGGTCCATGCAGAAGATTGTTTACAATTCAAAAGTGATTCAGAGTTAATTCCAGTTAAAGGAGCATCGGTAAGCAAATCAACTCATGGAAGCAAAGAAAGAAAGGATGGGGGAAAAGGAATATCAGAAGATGGTTTCATTACAACAAGGAAACGCAAATTTACAGCGAGAAATGATGAAAACTCTTCAAAAAGACCAGCAGAGAGTAGTAAGGGAACAGTTCCATTAGCAGGCAGAAAGGATGTTGCTATTAAAAGAAAGGCTTTAGCAGACACAACAAATTTTCATCATTCTCCGGCAACGATGATCACTGGGAAATGGAAGCGCCCTCAGCAACGTAAGCCAAATTTAAGACCTCCTTTGAAGCAGCTTGGACTTGAGCAATGGATTCAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

604

Amino Acids

66.84

Weight (kDa)

5.53

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_PRMT_N PF25350 57 - 84 5.8e-06 Protein arginine methyltransferase N-terminal PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1145
AciI CCGC 1 cut(s) 1383
AcsI RAATTY 8 cut(s) 4, 26, 383, 445, 1190, 1571, 1693, 1759
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 3 cut(s) 1145, 1472, 1643
AflIII ACRYGT 1 cut(s) 830
AjnI CCWGG 1 cut(s) 571
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
Alw21I GWGCWC 1 cut(s) 1406
Alw26I GTCTC 4 cut(s) 333, 654, 969, 1283
AlwNI CAGNNNCTG 2 cut(s) 624, 939
ApeKI GCWGC 4 cut(s) 153, 553, 868, 1780
ApoI RAATTY 8 cut(s) 4, 26, 383, 445, 1190, 1571, 1693, 1759
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 1 cut(s) 1740
AspS9I GGNCC 4 cut(s) 197, 575, 890, 1417
AsuC2I CCSGG 1 cut(s) 888
AsuHPI GGTGA 5 cut(s) 258, 371, 497, 797, 1250
AvaII GGWCC 4 cut(s) 197, 575, 890, 1417
BanII GRGCYC 1 cut(s) 1406
BarI GAAGNNNNNNTAC 2 cut(s) 1419, 1451
Bbv12I GWGCWC 1 cut(s) 1406
BbvCI CCTCAGC 1 cut(s) 1743
BbvI GCAGC 4 cut(s) 165, 565, 880, 1792
BccI CCATC 8 cut(s) 53, 389, 710, 980, 1324, 1343, 1514, 1538
BciT130I CCWGG 1 cut(s) 573
BciVI GTATCC 4 cut(s) 334, 529, 655, 970
BclI TGATCA 1 cut(s) 1719
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 4 cut(s) 333, 654, 969, 1283
BfoI RGCGCY 1 cut(s) 1741
BfuI GTATCC 4 cut(s) 334, 529, 655, 970
BisI GCNGC 4 cut(s) 154, 554, 869, 1781
BlsI GCNGC 4 cut(s) 155, 555, 870, 1782
Bme1390I CCNGG 2 cut(s) 573, 888
Bme18I GGWCC 4 cut(s) 197, 575, 890, 1417
BmgT120I GGNCC 4 cut(s) 197, 575, 890, 1417
BmiI GGNNCC 5 cut(s) 570, 885, 891, 1303, 1387
BmrFI CCNGG 2 cut(s) 573, 888
BmrI ACTGGG 2 cut(s) 1044, 1734
BmsI GCATC 2 cut(s) 22, 1487
BmuI ACTGGG 2 cut(s) 1044, 1734
BpmI CTGGAG 2 cut(s) 555, 1167
Bpu10I CCTNAGC 1 cut(s) 1743
BpuEI CTTGAG 4 cut(s) 295, 616, 931, 1811
BpuMI CCSGG 1 cut(s) 888
BsaBI GATNNNNATC 1 cut(s) 1158
BsaJI CCNNGG 3 cut(s) 657, 1216, 1297
BsaXI ACNNNNNCTCC 8 cut(s) 96, 126, 579, 609, 672, 702, 1467, 1497
Bsc4I CCNNNNNNNGG 3 cut(s) 1145, 1472, 1643
Bse118I RCCGGY 2 cut(s) 35, 236
Bse1I ACTGG 7 cut(s) 308, 629, 944, 1050, 1150, 1466, 1729
Bse3DI GCAATG 2 cut(s) 28, 1802
Bse8I GATNNNNATC 1 cut(s) 1158
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 3 cut(s) 657, 1216, 1297
BseGI GGATG 5 cut(s) 400, 721, 1036, 1525, 1660
BseJI GATNNNNATC 1 cut(s) 1158
BseLI CCNNNNNNNGG 3 cut(s) 1145, 1472, 1643
BseMI GCAATG 2 cut(s) 28, 1802
BseMII CTCAG 2 cut(s) 1419, 1757
BseNI ACTGG 7 cut(s) 308, 629, 944, 1050, 1150, 1466, 1729
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 4 cut(s) 165, 565, 880, 1792
BsgI GTGCAG 2 cut(s) 224, 1360
BsiHKAI GWGCWC 1 cut(s) 1406
BsiSI CCGG 4 cut(s) 36, 237, 887, 1709
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 1145, 1472, 1643
BsmAI GTCTC 4 cut(s) 333, 654, 969, 1283
BsmFI GGGAC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 1406
Bsp143I GATC 3 cut(s) 42, 1282, 1719
Bsp19I CCATGG 2 cut(s) 1216, 1297
BspACI CCGC 1 cut(s) 1383
BspCNI CTCAG 2 cut(s) 1418, 1756
BspLI GGNNCC 5 cut(s) 570, 885, 891, 1303, 1387
BspQI GCTCTTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 28, 1802
BsrFI RCCGGY 2 cut(s) 35, 236
BsrI ACTGG 7 cut(s) 308, 629, 944, 1050, 1150, 1466, 1729
BssAI RCCGGY 2 cut(s) 35, 236
BssECI CCNNGG 3 cut(s) 657, 1216, 1297
BssMI GATC 3 cut(s) 42, 1282, 1719
BssT1I CCWWGG 3 cut(s) 657, 1216, 1297
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 6 cut(s) 498, 776, 813, 1207, 1417, 1633
Bst6I CTCTTC 9 cut(s) 163, 426, 741, 783, 910, 1017, 1056, 1104, 1603
BstAPI GCANNNNNTGC 1 cut(s) 824
BstC8I GCNNGC 6 cut(s) 37, 510, 546, 825, 1277, 1645
BstDEI CTNAG 3 cut(s) 540, 1405, 1743
BstDSI CCRYGG 2 cut(s) 1216, 1297
BstF5I GGATG 5 cut(s) 400, 721, 1036, 1525, 1660
BstH2I RGCGCY 1 cut(s) 1741
BstHHI GCGC 1 cut(s) 1740
BstKTI GATC 3 cut(s) 45, 1285, 1722
BstMAI GTCTC 4 cut(s) 333, 654, 969, 1283
BstMBI GATC 3 cut(s) 42, 1282, 1719
BstMWI GCNNNNNNNGC 5 cut(s) 550, 824, 865, 1744, 1753
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 834
BstSCI CCNGG 2 cut(s) 571, 886
BstV1I GCAGC 4 cut(s) 165, 565, 880, 1792
BsuI GTATCC 4 cut(s) 334, 529, 655, 970
BtgI CCRYGG 2 cut(s) 1216, 1297
BtsCI GGATG 5 cut(s) 400, 721, 1036, 1525, 1660
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 4 cut(s) 469, 1143, 1212, 1722
Cac8I GCNNGC 6 cut(s) 37, 510, 546, 825, 1277, 1645
CaiI CAGNNNCTG 2 cut(s) 624, 939
CfoI GCGC 1 cut(s) 1740
Cfr10I RCCGGY 2 cut(s) 35, 236
Cfr13I GGNCC 4 cut(s) 197, 575, 890, 1417
Csp6I GTAC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 1350, 1385
CviAII CATG 9 cut(s) 72, 323, 831, 860, 1217, 1235, 1298, 1421, 1499
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 3 cut(s) 540, 1405, 1743
DpnI GATC 3 cut(s) 44, 1284, 1721
DpnII GATC 3 cut(s) 42, 1282, 1719
Eam1104I CTCTTC 9 cut(s) 163, 426, 741, 783, 910, 1017, 1056, 1104, 1603
EarI CTCTTC 9 cut(s) 163, 426, 741, 783, 910, 1017, 1056, 1104, 1603
Ecl136II GAGCTC 1 cut(s) 1404
Eco130I CCWWGG 3 cut(s) 657, 1216, 1297
Eco24I GRGCYC 1 cut(s) 1406
Eco47I GGWCC 4 cut(s) 197, 575, 890, 1417
Eco53kI GAGCTC 1 cut(s) 1404
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 1404
EcoO109I RGGNCCY 3 cut(s) 197, 575, 890
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 3 cut(s) 657, 1216, 1297
EcoT38I GRGCYC 1 cut(s) 1406
ErhI CCWWGG 3 cut(s) 657, 1216, 1297
FaeI CATG 9 cut(s) 75, 326, 834, 863, 1220, 1238, 1301, 1424, 1502
FalI AAGNNNNNCTT 4 cut(s) 1660, 1692, 1756, 1788
FaqI GGGAC 1 cut(s) 259
FatI CATG 9 cut(s) 71, 322, 830, 859, 1216, 1234, 1297, 1420, 1498
FauNDI CATATG 1 cut(s) 146
FbaI TGATCA 1 cut(s) 1719
Fnu4HI GCNGC 4 cut(s) 154, 554, 869, 1781
FokI GGATG 5 cut(s) 407, 728, 1043, 1532, 1667
FriOI GRGCYC 1 cut(s) 1406
Fsp4HI GCNGC 4 cut(s) 154, 554, 869, 1781
GlaI GCGC 1 cut(s) 1739
GluI GCNGC 4 cut(s) 154, 554, 869, 1781
GsuI CTGGAG 2 cut(s) 555, 1167
HaeII RGCGCY 1 cut(s) 1741
HapII CCGG 4 cut(s) 36, 237, 887, 1709
HhaI GCGC 1 cut(s) 1740
Hin1II CATG 9 cut(s) 75, 326, 834, 863, 1220, 1238, 1301, 1424, 1502
Hin6I GCGC 1 cut(s) 1738
HinP1I GCGC 1 cut(s) 1738
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HindIII AAGCTT 1 cut(s) 1249
HpaII CCGG 4 cut(s) 36, 237, 887, 1709
HphI GGTGA 5 cut(s) 258, 371, 497, 797, 1250
Hpy166II GTNNAC 3 cut(s) 1135, 1361, 1436
Hpy188III TCNNGA 4 cut(s) 501, 581, 1187, 1286
Hpy8I GTNNAC 3 cut(s) 1135, 1361, 1436
HpyAV CCTTC 9 cut(s) 218, 279, 342, 484, 663, 706, 978, 1021, 1120
HpyCH4III ACNGT 6 cut(s) 498, 776, 813, 1207, 1417, 1633
HpyCH4IV ACGT 1 cut(s) 1750
HpyF10VI GCNNNNNNNGC 5 cut(s) 550, 824, 865, 1744, 1753
HpyF3I CTNAG 3 cut(s) 540, 1405, 1743
HpySE526I ACGT 1 cut(s) 1750
Hsp92II CATG 9 cut(s) 75, 326, 834, 863, 1220, 1238, 1301, 1424, 1502
HspAI GCGC 1 cut(s) 1738
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 1719
Kzo9I GATC 3 cut(s) 42, 1282, 1719
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 3 cut(s) 574, 600, 1475
Lsp1109I GCAGC 4 cut(s) 165, 565, 880, 1792
LweI GCATC 2 cut(s) 22, 1487
MaeII ACGT 1 cut(s) 1750
MaeIII GTNAC 5 cut(s) 264, 518, 833, 850, 1052
MalI GATC 3 cut(s) 44, 1284, 1721
MboI GATC 3 cut(s) 42, 1282, 1719
MhlI GDGCHC 1 cut(s) 1406
MlyI GAGTC 5 cut(s) 114, 272, 335, 656, 971
MmeI TCCRAC 2 cut(s) 82, 1151
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 6 cut(s) 176, 1311, 1460, 1470, 1665, 1763
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 4 cut(s) 36, 237, 887, 1709
MspR9I CCNGG 2 cut(s) 573, 888
MvaI CCWGG 1 cut(s) 573
MwoI GCNNNNNNNGC 5 cut(s) 550, 824, 865, 1744, 1753
NaeI GCCGGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 888
NcoI CCATGG 2 cut(s) 1216, 1297
NdeI CATATG 1 cut(s) 146
NdeII GATC 3 cut(s) 42, 1282, 1719
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 9 cut(s) 75, 326, 834, 863, 1220, 1238, 1301, 1424, 1502
NlaIV GGNNCC 5 cut(s) 570, 885, 891, 1303, 1387
NmuCI GTSAC 3 cut(s) 264, 518, 833
NspI RCATGY 1 cut(s) 834
PciI ACATGT 1 cut(s) 830
PciSI GCTCTTC 1 cut(s) 163
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 9 cut(s) 68, 362, 584, 683, 899, 1265, 1372, 1451, 1801
PflMI CCANNNNNTGG 1 cut(s) 1145
PkrI GCNGC 4 cut(s) 155, 555, 870, 1782
PleI GAGTC 5 cut(s) 113, 271, 334, 655, 970
PpsI GAGTC 5 cut(s) 113, 271, 334, 655, 970
PpuMI RGGWCCY 3 cut(s) 197, 575, 890
PscI ACATGT 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 1406
Psp5II RGGWCCY 3 cut(s) 197, 575, 890
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 5 cut(s) 570, 885, 891, 1303, 1387
PspPI GGNCC 4 cut(s) 197, 575, 890, 1417
PspPPI RGGWCCY 3 cut(s) 197, 575, 890
PsrI GAACNNNNNNTAC 2 cut(s) 867, 899
PstNI CAGNNNCTG 2 cut(s) 624, 939
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SacI GAGCTC 1 cut(s) 1406
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 6 cut(s) 176, 1311, 1460, 1470, 1665, 1763
SatI GCNGC 4 cut(s) 154, 554, 869, 1781
Sau3AI GATC 3 cut(s) 42, 1282, 1719
Sau96I GGNCC 4 cut(s) 197, 575, 890, 1417
SchI GAGTC 5 cut(s) 114, 272, 335, 656, 971
ScrFI CCNGG 2 cut(s) 573, 888
SduI GDGCHC 1 cut(s) 1406
SfaNI GCATC 2 cut(s) 22, 1487
SinI GGWCC 4 cut(s) 197, 575, 890, 1417
SmlI CTYRAG 4 cut(s) 310, 631, 946, 1790
SmoI CTYRAG 4 cut(s) 310, 631, 946, 1790
SsiI CCGC 1 cut(s) 1383
SstI GAGCTC 1 cut(s) 1406
StyD4I CCNGG 2 cut(s) 571, 886
StyI CCWWGG 3 cut(s) 657, 1216, 1297
TaaI ACNGT 6 cut(s) 498, 776, 813, 1207, 1417, 1633
TaiI ACGT 1 cut(s) 1753
TaqI TCGA 1 cut(s) 1319
TatI WGTACW 1 cut(s) 452
TfiI GAWTC 9 cut(s) 68, 362, 584, 683, 899, 1265, 1372, 1451, 1801
Tru1I TTAA 6 cut(s) 176, 1311, 1460, 1470, 1665, 1763
Tru9I TTAA 6 cut(s) 176, 1311, 1460, 1470, 1665, 1763
TscAI CASTG 4 cut(s) 469, 1150, 1212, 1729
TseFI GTSAC 3 cut(s) 264, 518, 833
TseI GCWGC 4 cut(s) 153, 553, 868, 1780
Tsp45I GTSAC 3 cut(s) 264, 518, 833
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 4 cut(s) 469, 1150, 1212, 1729
Van91I CCANNNNNTGG 1 cut(s) 1145
VpaK11BI GGWCC 4 cut(s) 197, 575, 890, 1417
XapI RAATTY 8 cut(s) 4, 26, 383, 445, 1190, 1571, 1693, 1759
XceI RCATGY 1 cut(s) 834
XmnI GAANNNNTTC 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.