AT4G16807

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001095
Physical Location & Seq
Reverse (-)
9457079 .. 9459454
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16807.1

Sequence Viewer

Length: 1320 bp
ATGCCGGAATTCATCTCAGTGCAGGAAGATGGATACTCCGATTCAACATCTCCCATTTCCGAACCACCAGATATTACGAATTGGTTTCCCAGTTATGTATATGAATCGTTACCATTGTCTTCTTCAATCAATGAAATTGAAATCGAAGTAGATGTGGTCAACAAAGCAAATCCTGGTGGTGTTATTGATGAATCACTTCCTTCTGAACCTCCTGATTTAGGTAAATGGTTTTCGAGCTATGTCTATGAATCGCCGTTGCTGGATACAAGTGATGGACTTGAATTGTCTGTTCCTGGAGAAAGTGAATGTGTAAAGGAGACCCAAACAGAAAATGAGTCACCAAAAATTGAAGGAAATGATGTTTGTCCGAGGTTATTAGAGCAAGAACTTGTCTCTTCTACAAAGGTTACAGATTTCTCTGAGTCGCAGTCTGTTCTTTCGGAGCCTCCTGATCTCAGAAACTGGTTTTCAAGCTATGAGTATCAATCTCCTCAGCTTTCAGACATTCAAGAATTTGGATTTTTATATTCTGAGAAAGATGAGTTAATCATTGAGGAGAGTGACACTGAGGAGGGAATTAGTTCCGGTATATTTCGAAAAATTAAGAGCAGGCAAGAGACTGTTGGTCTTGGCAGGTTAGATTCAAATGACTACAAGGAAAACATAGCCACAGACACAGCCAAGGAGGTTTCTTTAGACAATGCAGTTTCAGACCAAAAAATGGAAAAGAGGTCATCAGTTAGATTGTTAAATGCCTCAAAGAAAGATGTGAAACAAGAATCAAGCTTCAAGCAGGAACCATTATTATGTGAACTACAAGAAGAAGCAAGGTTTAGCCCCAGAGTTTCCAGATACAACCCAAAACTCAAATCACCTTCGAAGAACGACACTTCTTTACATGAGTTGAGACCAATACATATTCAAGAATCCATCTCCATGAACTCCAACAGACAAAAGTCTCCTCCAATAGAACAAGAATCATATGACAAGGAAAATGTTCACGGACAAAGCAATCAAACTGGATTTGTGACGATGAAAAAGGCAAGTTTCAGAGAAGCAAGAGACCAATGTTCCCTGAAGAAACCAAATACAGAAGTTCTGGTGAAGTGTTCGAGTAGTAAAGAGTTGAAGACAAAAGCTGGGGAGGATAACACAGAAGAAAGAGAGAAAAAGAGAAGAGTTTTGGGAGAAATGTCAAATCAACTGTCCTCCGTTGCTAAAGAGATCGCAGGAAAATGGCGCTGCCCGCAAAAGAACAAAAGGAAGATAGTTCCACCATTGAAGCAGCTTCGACTTGACGCATGGATACACAAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

49.7

Weight (kDa)

4.95

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 624
AccB7I CCANNNNNTGG 1 cut(s) 721
AciI CCGC 1 cut(s) 1247
AcsI RAATTY 2 cut(s) 8, 512
AcuI CTGAAG 1 cut(s) 1097
AfiI CCNNNNNNNGG 2 cut(s) 218, 721
AhdI GACNNNNNGTC 1 cut(s) 624
AjnI CCWGG 2 cut(s) 172, 292
AluBI AGCT 6 cut(s) 237, 474, 496, 786, 1139, 1288
AluI AGCT 6 cut(s) 237, 474, 496, 786, 1139, 1288
Alw26I GTCTC 6 cut(s) 311, 397, 611, 901, 963, 1056
AlwNI CAGNNNCTG 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 1242, 1285
ApoI RAATTY 2 cut(s) 8, 512
ArsI GACNNNNNNTTYG 2 cut(s) 1190, 1222
Asp700I GAANNNNTTC 3 cut(s) 195, 580, 996
AspLEI GCGC 1 cut(s) 1242
AsuHPI GGTGA 3 cut(s) 330, 864, 1114
AsuII TTCGAA 2 cut(s) 595, 878
BbsI GAAGAC 2 cut(s) 111, 1136
BbvCI CCTCAGC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 1229, 1297
BccI CCATC 3 cut(s) 23, 266, 938
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 2 cut(s) 174, 294
BciVI GTATCC 3 cut(s) 26, 256, 1299
BcoDI GTCTC 6 cut(s) 311, 397, 611, 901, 963, 1056
BfoI RGCGCY 1 cut(s) 1243
BfuAI ACCTGC 1 cut(s) 624
BfuI GTATCC 3 cut(s) 26, 256, 1299
BisI GCNGC 2 cut(s) 1243, 1286
BlsI GCNGC 2 cut(s) 1244, 1287
Bme1390I CCNGG 2 cut(s) 174, 294
BmeRI GACNNNNNGTC 1 cut(s) 624
BmiI GGNNCC 2 cut(s) 444, 798
BmrFI CCNGG 2 cut(s) 174, 294
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BoxI GACNNNNGTC 1 cut(s) 955
BpiI GAAGAC 2 cut(s) 111, 1136
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 2 cut(s) 595, 878
BsaI GGTCTC 3 cut(s) 311, 901, 1056
BsaJI CCNNGG 2 cut(s) 368, 681
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 721
Bse1I ACTGG 3 cut(s) 90, 467, 1024
BseBI CCWGG 2 cut(s) 174, 294
BseDI CCNNGG 2 cut(s) 368, 681
BseLI CCNNNNNNNGG 2 cut(s) 218, 721
BseMII CTCAG 6 cut(s) 30, 411, 469, 506, 522, 558
BseNI ACTGG 3 cut(s) 90, 467, 1024
BseRI GAGGAG 4 cut(s) 480, 569, 584, 951
BseXI GCAGC 2 cut(s) 1229, 1297
BseYI CCCAGC 1 cut(s) 1139
BsgI GTGCAG 1 cut(s) 41
BsiSI CCGG 2 cut(s) 5, 585
BslI CCNNNNNNNGG 2 cut(s) 218, 721
BsmAI GTCTC 6 cut(s) 311, 397, 611, 901, 963, 1056
Bso31I GGTCTC 3 cut(s) 311, 901, 1056
Bsp119I TTCGAA 2 cut(s) 595, 878
Bsp143I GATC 2 cut(s) 451, 1224
BspACI CCGC 1 cut(s) 1247
BspCNI CTCAG 6 cut(s) 29, 412, 468, 505, 523, 559
BspLI GGNNCC 2 cut(s) 444, 798
BspMI ACCTGC 1 cut(s) 624
BspT104I TTCGAA 2 cut(s) 595, 878
BspTNI GGTCTC 3 cut(s) 311, 901, 1056
BsrI ACTGG 3 cut(s) 90, 467, 1024
BssECI CCNNGG 2 cut(s) 368, 681
BssMI GATC 2 cut(s) 451, 1224
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 2 cut(s) 174, 294
Bst4CI ACNGT 2 cut(s) 622, 1206
Bst6I CTCTTC 2 cut(s) 400, 1171
BstBI TTCGAA 2 cut(s) 595, 878
BstC8I GCNNGC 2 cut(s) 611, 1247
BstDEI CTNAG 6 cut(s) 16, 420, 455, 492, 531, 567
BstENI CCTNNNNNAGG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 1243
BstHHI GCGC 1 cut(s) 1242
BstKTI GATC 2 cut(s) 454, 1227
BstMAI GTCTC 6 cut(s) 311, 397, 611, 901, 963, 1056
BstMBI GATC 2 cut(s) 451, 1224
BstMWI GCNNNNNNNGC 1 cut(s) 1246
BstNI CCWGG 2 cut(s) 174, 294
BstPAI GACNNNNGTC 1 cut(s) 955
BstSCI CCNGG 2 cut(s) 172, 292
BstV1I GCAGC 2 cut(s) 1229, 1297
BstV2I GAAGAC 2 cut(s) 111, 1136
BsuI GTATCC 3 cut(s) 26, 256, 1299
BtsIMutI CAGTG 2 cut(s) 24, 564
BveI ACCTGC 1 cut(s) 624
Cac8I GCNNGC 2 cut(s) 611, 1247
CaiI CAGNNNCTG 1 cut(s) 462
CfoI GCGC 1 cut(s) 1242
CseI GACGC 1 cut(s) 1307
CviAII CATG 3 cut(s) 899, 937, 1302
DdeI CTNAG 6 cut(s) 16, 420, 455, 492, 531, 567
DpnI GATC 2 cut(s) 453, 1226
DpnII GATC 2 cut(s) 451, 1224
DriI GACNNNNNGTC 1 cut(s) 624
Eam1104I CTCTTC 2 cut(s) 400, 1171
Eam1105I GACNNNNNGTC 1 cut(s) 624
EarI CTCTTC 2 cut(s) 400, 1171
Eco130I CCWWGG 1 cut(s) 681
Eco31I GGTCTC 3 cut(s) 311, 901, 1056
Eco57I CTGAAG 1 cut(s) 1097
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 172, 292
EcoT14I CCWWGG 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 3 cut(s) 902, 940, 1305
FatI CATG 3 cut(s) 898, 936, 1301
FauI CCCGC 1 cut(s) 1254
FauNDI CATATG 1 cut(s) 982
Fnu4HI GCNGC 2 cut(s) 1243, 1286
Fsp4HI GCNGC 2 cut(s) 1243, 1286
GlaI GCGC 1 cut(s) 1241
GluI GCNGC 2 cut(s) 1243, 1286
GsaI CCCAGC 1 cut(s) 1143
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 1243
HapII CCGG 2 cut(s) 5, 585
HgaI GACGC 1 cut(s) 1307
HhaI GCGC 1 cut(s) 1242
Hin1II CATG 3 cut(s) 902, 940, 1305
Hin6I GCGC 1 cut(s) 1240
HinP1I GCGC 1 cut(s) 1240
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 784
HpaII CCGG 2 cut(s) 5, 585
HphI GGTGA 3 cut(s) 330, 864, 1114
Hpy166II GTNNAC 3 cut(s) 160, 812, 1000
Hpy188III TCNNGA 5 cut(s) 212, 449, 509, 849, 923
Hpy8I GTNNAC 3 cut(s) 160, 812, 1000
HpyAV CCTTC 3 cut(s) 210, 344, 885
HpyCH4III ACNGT 2 cut(s) 622, 1206
HpyCH4V TGCA 2 cut(s) 22, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 1246
HpyF3I CTNAG 6 cut(s) 16, 420, 455, 492, 531, 567
Hsp92II CATG 3 cut(s) 902, 940, 1305
HspAI GCGC 1 cut(s) 1240
Kzo9I GATC 2 cut(s) 451, 1224
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 2 cut(s) 1229, 1297
MaeIII GTNAC 5 cut(s) 108, 336, 406, 560, 1027
MalI GATC 2 cut(s) 453, 1226
MboI GATC 2 cut(s) 451, 1224
MluCI AATT 8 cut(s) 8, 79, 135, 281, 345, 512, 576, 600
MlyI GAGTC 2 cut(s) 344, 431
MmeI TCCRAC 1 cut(s) 969
MroXI GAANNNNTTC 3 cut(s) 195, 580, 996
MseI TTAA 3 cut(s) 545, 603, 749
MslI CAYNNNNRTG 3 cut(s) 17, 805, 935
MspI CCGG 2 cut(s) 5, 585
MspR9I CCNGG 2 cut(s) 174, 294
MvaI CCWGG 2 cut(s) 174, 294
MwoI GCNNNNNNNGC 1 cut(s) 1246
NdeI CATATG 1 cut(s) 982
NdeII GATC 2 cut(s) 451, 1224
NlaIII CATG 3 cut(s) 902, 940, 1305
NlaIV GGNNCC 2 cut(s) 444, 798
NmuCI GTSAC 3 cut(s) 336, 560, 1027
NspV TTCGAA 2 cut(s) 595, 878
PdmI GAANNNNTTC 3 cut(s) 195, 580, 996
PfeI GAWTC 8 cut(s) 41, 104, 191, 248, 641, 779, 926, 977
PflMI CCANNNNNTGG 1 cut(s) 721
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 2 cut(s) 1244, 1287
PleI GAGTC 2 cut(s) 343, 430
PpsI GAGTC 2 cut(s) 343, 430
PshAI GACNNNNGTC 1 cut(s) 955
Psp6I CCWGG 2 cut(s) 172, 292
PspFI CCCAGC 1 cut(s) 1139
PspGI CCWGG 2 cut(s) 172, 292
PspN4I GGNNCC 2 cut(s) 444, 798
PstNI CAGNNNCTG 1 cut(s) 462
RseI CAYNNNNRTG 3 cut(s) 17, 805, 935
SaqAI TTAA 3 cut(s) 545, 603, 749
SatI GCNGC 2 cut(s) 1243, 1286
Sau3AI GATC 2 cut(s) 451, 1224
SchI GAGTC 2 cut(s) 344, 431
ScrFI CCNGG 2 cut(s) 174, 294
SfuI TTCGAA 2 cut(s) 595, 878
SmiMI CAYNNNNRTG 3 cut(s) 17, 805, 935
Sse9I AATT 8 cut(s) 8, 79, 135, 281, 345, 512, 576, 600
SsiI CCGC 1 cut(s) 1247
StyD4I CCNGG 2 cut(s) 172, 292
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 2 cut(s) 622, 1206
TaqI TCGA 6 cut(s) 144, 233, 595, 878, 1112, 1291
TasI AATT 8 cut(s) 8, 79, 135, 281, 345, 512, 576, 600
TfiI GAWTC 8 cut(s) 41, 104, 191, 248, 641, 779, 926, 977
Tru1I TTAA 3 cut(s) 545, 603, 749
Tru9I TTAA 3 cut(s) 545, 603, 749
TscAI CASTG 2 cut(s) 24, 571
TseFI GTSAC 3 cut(s) 336, 560, 1027
TseI GCWGC 2 cut(s) 1242, 1285
Tsp45I GTSAC 3 cut(s) 336, 560, 1027
TspDTI ATGAA 6 cut(s) 117, 147, 204, 261, 953, 1049
TspGWI ACGGA 2 cut(s) 1017, 1201
TspRI CASTG 2 cut(s) 24, 571
Van91I CCANNNNNTGG 1 cut(s) 721
XagI CCTNNNNNAGG 1 cut(s) 216
XapI RAATTY 2 cut(s) 8, 512
XmnI GAANNNNTTC 3 cut(s) 195, 580, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.