Rh2CG177800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001095
Physical Location & Seq
Reverse (-)
16312504 .. 16317326
4823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG177800.1

Sequence Viewer

Length: 513 bp
ATGAATTCCAATTCTTTTCGCAATGAATTTGATACCGGTGAGGTCAAAAGAGAAAAAGATGGAGGAGATTCATGTGAGTTTATGGAAAATGGAAATAAAGTTGAAGTCTTTGTTCATAAAAAGCAGAACTCAGATGAGGTTGTCAAAAGTGGTAGCTCTTCACAAAACCAATGCTTAATATGCAAGGATATCCATGGGGTAACTTGGGTTGATGACAACAAGGCAACAAATGTAGAAGCTACATACACAGGACTAATGGGTCTAAAGAGGCAAAAGTCTGTGATCCTACTTGGCGGCCTTGCAAAGGATGTGACTGAGCAAGGAGAAACTGTAGAAGTTAGAGTAACAAAAGCACTTATGGAATATGCATACATACAATTCATATGGCAAGGCTCTGATGATGGGAACTACAACTGTAACCACACTTTGAAAGATCATACAACTGAGAATTTAGGTATTGCTGGTGTGGAATCAATCTCTCATTGCTGGTGTGGAATCTCTCATTGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C Mur_ligase_C Mur_ligase_M

Protein Analysis

170

Amino Acids

18.89

Weight (kDa)

5.11

Isoelectric Point (pI)

25.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 258
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 3 cut(s) 4, 26, 448
AfiI CCNNNNNNNGG 1 cut(s) 304
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 2 cut(s) 104, 430
AluBI AGCT 2 cut(s) 156, 239
AluI AGCT 2 cut(s) 156, 239
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 295
ApoI RAATTY 3 cut(s) 4, 26, 448
AsiGI ACCGGT 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 50
BccI CCATC 2 cut(s) 53, 395
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 35
Bse3DI GCAATG 2 cut(s) 28, 481
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 2 cut(s) 28, 481
BseMII CTCAG 3 cut(s) 144, 306, 435
BseRI GAGGAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 297
BshTI ACCGGT 1 cut(s) 35
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 304
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 282, 433
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 3 cut(s) 143, 307, 436
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 28, 481
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 282, 433
BssT1I CCWWGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 331, 416
Bst6I CTCTTC 1 cut(s) 163
BstDEI CTNAG 3 cut(s) 130, 315, 444
BstDSI CCRYGG 1 cut(s) 193
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 2 cut(s) 285, 436
BstMBI GATC 2 cut(s) 282, 433
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 35
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 72, 194
CviJI RGCY 4 cut(s) 156, 239, 297, 393
CviKI_1 RGCY 4 cut(s) 156, 239, 297, 393
DdeI CTNAG 3 cut(s) 130, 315, 444
DpnI GATC 2 cut(s) 284, 435
DpnII GATC 2 cut(s) 282, 433
DrdI GACNNNNNNGTC 1 cut(s) 258
DseDI GACNNNNNNGTC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 193
Eco32I GATATC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 75, 197
FatI CATG 2 cut(s) 71, 193
FauNDI CATATG 1 cut(s) 383
Fnu4HI GCNGC 1 cut(s) 295
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 295
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 36
Hin1II CATG 2 cut(s) 75, 197
HinfI GANTC 3 cut(s) 68, 470, 495
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 133, 397
HpyCH4III ACNGT 2 cut(s) 331, 416
HpyCH4V TGCA 3 cut(s) 183, 302, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 3 cut(s) 130, 315, 444
Hsp92II CATG 2 cut(s) 75, 197
Kzo9I GATC 2 cut(s) 282, 433
LguI GCTCTTC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 49, 234, 447, 472
MaeIII GTNAC 4 cut(s) 199, 310, 343, 416
MalI GATC 2 cut(s) 284, 435
MboI GATC 2 cut(s) 282, 433
MboII GAAGA 1 cut(s) 150
MluCI AATT 5 cut(s) 4, 10, 26, 377, 448
MnlI CCTC 4 cut(s) 34, 56, 130, 261
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 180
NcoI CCATGG 1 cut(s) 193
NdeI CATATG 1 cut(s) 383
NdeII GATC 2 cut(s) 282, 433
NlaIII CATG 2 cut(s) 75, 197
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 68, 470, 495
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 2 cut(s) 282, 433
SetI ASST 5 cut(s) 45, 141, 158, 241, 457
SfcI CTRYAG 1 cut(s) 330
Sse9I AATT 5 cut(s) 4, 10, 26, 377, 448
SsiI CCGC 1 cut(s) 294
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 331, 416
TasI AATT 5 cut(s) 4, 10, 26, 377, 448
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 3 cut(s) 68, 470, 495
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 5 cut(s) 17, 39, 60, 104, 370
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 3 cut(s) 4, 26, 448
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.