AT3G47560
ERF Family

Alpha beta-Hydrolases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000515
Physical Location & Seq
Reverse (-)
17525476 .. 17527162
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47560.1

Sequence Viewer

Length: 798 bp
ATGGATTCATCGCAGGGAAGTACACAACAGAAGATTGTGATTCTGAACAGCCACAATGAGAACCTGGTGGGTCTGCTTCATGAAACTGGTTCTACAGAAATTGTAGTCTTGTGTCATGGCTTTCGATCAAACAAGAACTTCGAAATTATGAAAAATGTGGCTGTTGCTATAGAGAGAGAAGGGATTAGTGCTTTCCGTTTTGATTTCTCCGGGAATGGAGAGAGTGAAGGCAGTTTCTATTATGGTAACTACAATTACGAAGCTGATGATCTACATTCTGTTATCCAATACTTCTCTAACTTGAACCGTGTTGTTACTATAATTCTCGGTCACAGTAAAGGAGGTGATGTGGTCCTCCTCTATGCCTCCAAGTATCACGATATCCCCAATGTGATCAATCTCTCGGGACGTTATGATCTGAAGAAAGGCATAGGAGAACGTCTTGGTGAAGATTTTTTGGAAAGAATTAAGCAACAAGGATACATCGATGTTAAAGATGGAGATTCTGGTTACCGTGTTACCGAGGAGAGTTTGATGGACCGGTTAAACACAGATATGCATGAAGCTTGCCTCAAGATTGACAAAGAATGCAGGGTCTTGACGGTCCATGGATCGGGTGACGAGACAGTACCAGTGGAAGATGCAAAGGAGTTTGCAAAGATAATACCGAACCACGAGCTACAGATTGTGGAAGGAGCTGATCATTGTTATACCAATTATCAAAGTCAATTGGTTTTAACGGTTATGGAGTTCATAAAGAGTCATTGTGAAGAAAAAAACGACAAGACTTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

265

Amino Acids

29.87

Weight (kDa)

5.07

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 33 - 142 2.2e-12 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 34 - 136 2.1e-08 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 619
AcuI CTGAAG 1 cut(s) 440
AfaI GTAC 2 cut(s) 22, 630
AfiI CCNNNNNNNGG 1 cut(s) 613
AgeI ACCGGT 1 cut(s) 540
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 4 cut(s) 263, 566, 679, 698
AluI AGCT 4 cut(s) 263, 566, 679, 698
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 1 cut(s) 619
Ama87I CYCGRG 1 cut(s) 403
AsiGI ACCGGT 1 cut(s) 540
AspS9I GGNCC 3 cut(s) 352, 538, 604
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 356, 458, 629
AsuII TTCGAA 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 403
AvaII GGWCC 3 cut(s) 352, 538, 604
BauI CACGAG 1 cut(s) 674
BccI CCATC 2 cut(s) 491, 529
BciT130I CCWGG 1 cut(s) 65
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 2 cut(s) 393, 700
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 617
BfmI CTRYAG 3 cut(s) 93, 168, 680
BfuI GTATCC 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 65, 211
Bme18I GGWCC 3 cut(s) 352, 538, 604
BmeT110I CYCGRG 1 cut(s) 403
BmgT120I GGNCC 3 cut(s) 352, 538, 604
BmrFI CCNGG 2 cut(s) 65, 211
BmsI GCATC 1 cut(s) 631
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 211
Bsa29I ATCGAT 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 522, 607
BsaWI WCCGGW 1 cut(s) 540
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse118I RCCGGY 1 cut(s) 540
Bse1I ACTGG 2 cut(s) 91, 632
BseBI CCWGG 1 cut(s) 65
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 522, 607
BseLI CCNNNNNNNGG 1 cut(s) 613
BseNI ACTGG 2 cut(s) 91, 632
BseRI GAGGAG 2 cut(s) 347, 539
BshTI ACCGGT 1 cut(s) 540
BshVI ATCGAT 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 403
BsiSI CCGG 2 cut(s) 210, 541
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 613
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 593
BsoBI CYCGRG 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 141
Bsp143I GATC 6 cut(s) 125, 268, 393, 415, 611, 700
Bsp19I CCATGG 1 cut(s) 607
BspDI ATCGAT 1 cut(s) 486
BspHI TCATGA 1 cut(s) 79
BspPI GGATC 1 cut(s) 619
BspT104I TTCGAA 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 540
BsrI ACTGG 2 cut(s) 91, 632
BssAI RCCGGY 1 cut(s) 540
BssECI CCNNGG 2 cut(s) 522, 607
BssMI GATC 6 cut(s) 125, 268, 393, 415, 611, 700
BssSI CACGAG 1 cut(s) 674
BssT1I CCWWGG 1 cut(s) 607
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 6 cut(s) 308, 335, 515, 604, 628, 742
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 568
BstDSI CCRYGG 1 cut(s) 607
BstEII GGTNACC 1 cut(s) 509
BstKTI GATC 6 cut(s) 128, 271, 396, 418, 614, 703
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 6 cut(s) 125, 268, 393, 415, 611, 700
BstNI CCWGG 1 cut(s) 65
BstPI GGTNACC 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 63, 209
BstSFI CTRYAG 3 cut(s) 93, 168, 680
Bsu15I ATCGAT 1 cut(s) 486
BsuI GTATCC 1 cut(s) 473
BsuTUI ATCGAT 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 607
BtsIMutI CAGTG 1 cut(s) 639
Cac8I GCNNGC 1 cut(s) 568
CciI TCATGA 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 540
Cfr13I GGNCC 3 cut(s) 352, 538, 604
ClaI ATCGAT 1 cut(s) 486
CsiI ACCWGGT 1 cut(s) 63
Csp6I GTAC 2 cut(s) 21, 629
CspAI ACCGGT 1 cut(s) 540
CviAII CATG 4 cut(s) 80, 116, 560, 608
CviJI RGCY 7 cut(s) 51, 120, 161, 263, 566, 679, 698
CviKI_1 RGCY 7 cut(s) 51, 120, 161, 263, 566, 679, 698
CviQI GTAC 2 cut(s) 21, 629
DpnI GATC 6 cut(s) 127, 270, 395, 417, 613, 702
DpnII GATC 6 cut(s) 125, 268, 393, 415, 611, 700
Eco130I CCWWGG 1 cut(s) 607
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 3 cut(s) 352, 538, 604
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 403
Eco91I GGTNACC 1 cut(s) 509
EcoO65I GGTNACC 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 63
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 4 cut(s) 83, 119, 563, 611
FaqI GGGAC 1 cut(s) 420
FatI CATG 4 cut(s) 79, 115, 559, 607
FbaI TGATCA 2 cut(s) 393, 700
HapII CCGG 2 cut(s) 210, 541
Hin1II CATG 4 cut(s) 83, 119, 563, 611
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 4 cut(s) 5, 40, 503, 760
HpaII CCGG 2 cut(s) 210, 541
HphI GGTGA 3 cut(s) 356, 458, 629
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 45, 420
Hpy188III TCNNGA 5 cut(s) 80, 377, 405, 574, 598
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 173, 221, 686
HpyCH4III ACNGT 6 cut(s) 308, 335, 515, 604, 628, 742
HpyCH4IV ACGT 2 cut(s) 409, 439
HpyCH4V TGCA 4 cut(s) 559, 591, 644, 656
HpySE526I ACGT 2 cut(s) 409, 439
Hsp92II CATG 4 cut(s) 83, 119, 563, 611
Ksp22I TGATCA 2 cut(s) 393, 700
Kzo9I GATC 6 cut(s) 125, 268, 393, 415, 611, 700
LmnI GCTCC 1 cut(s) 695
LpnPI CCDG 8 cut(s) 50, 72, 77, 223, 492, 554, 577, 645
LweI GCATC 1 cut(s) 631
MabI ACCWGGT 1 cut(s) 63
MaeII ACGT 2 cut(s) 409, 439
MaeIII GTNAC 6 cut(s) 245, 313, 329, 509, 517, 617
MalI GATC 6 cut(s) 127, 270, 395, 417, 613, 702
MboI GATC 6 cut(s) 125, 268, 393, 415, 611, 700
MboII GAAGA 5 cut(s) 43, 433, 461, 650, 782
MfeI CAATTG 1 cut(s) 728
MluCI AATT 8 cut(s) 99, 144, 253, 321, 465, 715, 728, 793
MlyI GAGTC 1 cut(s) 769
MnlI CCTC 6 cut(s) 335, 365, 368, 376, 517, 581
Mph1103I ATGCAT 1 cut(s) 561
MseI TTAA 4 cut(s) 468, 492, 545, 737
MslI CAYNNNNRTG 1 cut(s) 554
MspI CCGG 2 cut(s) 210, 541
MspR9I CCNGG 2 cut(s) 65, 211
MunI CAATTG 1 cut(s) 728
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 65
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 607
NdeII GATC 6 cut(s) 125, 268, 393, 415, 611, 700
NlaIII CATG 4 cut(s) 83, 119, 563, 611
NmuCI GTSAC 2 cut(s) 329, 617
NsiI ATGCAT 1 cut(s) 561
NspV TTCGAA 1 cut(s) 141
PagI TCATGA 1 cut(s) 79
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 5, 40, 503
PfoI TCCNGGA 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 540
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 63
PspEI GGTNACC 1 cut(s) 509
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 3 cut(s) 352, 538, 604
RsaI GTAC 2 cut(s) 22, 630
RsaNI GTAC 2 cut(s) 21, 629
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 4 cut(s) 468, 492, 545, 737
Sau3AI GATC 6 cut(s) 125, 268, 393, 415, 611, 700
Sau96I GGNCC 3 cut(s) 352, 538, 604
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 2 cut(s) 65, 211
SetI ASST 8 cut(s) 66, 265, 346, 412, 442, 568, 681, 700
SexAI ACCWGGT 1 cut(s) 63
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 3 cut(s) 93, 168, 680
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 3 cut(s) 352, 538, 604
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 8 cut(s) 99, 144, 253, 321, 465, 715, 728, 793
StyD4I CCNGG 2 cut(s) 63, 209
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 6 cut(s) 308, 335, 515, 604, 628, 742
TaiI ACGT 2 cut(s) 412, 442
TaqI TCGA 3 cut(s) 124, 141, 486
TaqII GACCGA 1 cut(s) 317
TasI AATT 8 cut(s) 99, 144, 253, 321, 465, 715, 728, 793
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 3 cut(s) 5, 40, 503
Tru1I TTAA 4 cut(s) 468, 492, 545, 737
Tru9I TTAA 4 cut(s) 468, 492, 545, 737
TscAI CASTG 1 cut(s) 639
TseFI GTSAC 2 cut(s) 329, 617
Tsp45I GTSAC 2 cut(s) 329, 617
TspDTI ATGAA 5 cut(s) 68, 96, 164, 576, 742
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 639
VpaK11BI GGWCC 3 cut(s) 352, 538, 604
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.