Rroxscaffold_2G00147990

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000515
Physical Location & Seq
Forward (+)
85669511 .. 85672649
3139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147990.1

Sequence Viewer

Length: 909 bp
ATGCTGCTCTCAAATTCTTATTCTTTAACTTCCCTTAAGTTCCCATCGCCAAAACCCAGTCTTCACCAAAATCGCAGCCCAAAACGAATCGTGAAAATGGCCCAGACTGCCCAAAACCCGGTGAAGCAGCAACTGAAAATCGTTGTACCCAACAAACATGGTGAAAAACTTGTGGGCTTATTACATGACACAGGTTCTGGGGAGATTGTAATCTTATGTCATGGTTTTCGATCCTCAAAGGTTGGCTTTTGTCATGAGACAACTAGCATTGCAAACATTGCTGTTGCGTTGGAGAATGAAGGAATTAGCTCCTTCCGTTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGTACCTTTCAGTATGGTCATTATCGTAGAGAGGCCGATGACTTGCATGCTGTAGTCCAACACTTCTCTGGGGCAAATCGTGTACCAAGTGCAATCCTTGGGCACAGTAAAGGAGGTAATGTTGTGCTCCTATATGCTTCCAAGTATCATAACATTCCTACCGTTGTCAATGTTTCTGGGCGTTATGATATGAAGAGAGGCATTAAAGAACGATTGGGAGATGACTTTATGCAAACAATCAAGAAGGAAGGATTCATTGATGTTCAGAATAAGAGAGGAAGTTATCGTGTGACTGAGGAAAGTTTGATGGATCGCCTAAGTACAGATATGCATGGAGCATGCCTTCAGATTGACAAAGATTGTCGGGTGTTAACTGTCCACGGGTCTGCTGATGAAATCATTAGTGTTGAAGATGCATTAGAGTTTGACAAGATTATACCTAACCACAAATTACATATCATAGAGGGGGCTAACCATAACTACAGCTCACATCAAACCGAGTTGGCATCAGTTGTTGTGGACTTCATAAAGACATCTCTGCAGCAGGACAAGGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

302

Amino Acids

33.5

Weight (kDa)

7.78

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 69 - 182 2.7e-12 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 69 - 176 4.6e-07 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 70 - 275 3.6e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AclWI GGATC 2 cut(s) 225, 666
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 4 cut(s) 147, 352, 432, 670
AfiI CCNNNNNNNGG 1 cut(s) 118
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 758
AluBI AGCT 2 cut(s) 309, 834
AluI AGCT 2 cut(s) 309, 834
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 2 cut(s) 225, 666
AlwNI CAGNNNCTG 2 cut(s) 133, 197
AoxI GGCC 2 cut(s) 99, 381
ApeKI GCWGC 4 cut(s) 4, 75, 127, 889
ApoI RAATTY 1 cut(s) 13
Asp718I GGTACC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 3 cut(s) 56, 133, 173
BaeGI GKGCMC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 3 cut(s) 87, 139, 901
BccI CCATC 2 cut(s) 52, 649
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 3 cut(s) 399, 829, 887
BfrI CTTAAG 1 cut(s) 35
BisI GCNGC 4 cut(s) 5, 76, 128, 890
BlsI GCNGC 4 cut(s) 6, 77, 129, 891
Bme1390I CCNGG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 751, 863
BmuI ACTGGG 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 445, 727
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 2 cut(s) 267, 276
Bse8I GATNNNNATC 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 445, 727
BseJI GATNNNNATC 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 2 cut(s) 267, 276
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 3 cut(s) 87, 139, 901
BshFI GGCC 2 cut(s) 101, 383
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 2 cut(s) 101, 383
Bsp1286I GDGCHC 2 cut(s) 453, 477
Bsp143I GATC 2 cut(s) 230, 658
BspANI GGCC 2 cut(s) 101, 383
BspCNI CTCAG 1 cut(s) 634
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 352
BspMAI CTGCAG 1 cut(s) 891
BspPI GGATC 2 cut(s) 225, 666
BspT107I GGYRCC 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 35
BsrDI GCAATG 2 cut(s) 267, 276
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 445, 727
BssMI GATC 2 cut(s) 230, 658
BssT1I CCWWGG 1 cut(s) 445
Bst4CI ACNGT 3 cut(s) 455, 511, 724
Bst6I CTCTTC 1 cut(s) 536
BstAFI CTTAAG 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 396, 688
BstDEI CTNAG 2 cut(s) 642, 665
BstDSI CCRYGG 1 cut(s) 727
BstKTI GATC 2 cut(s) 233, 661
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 230, 658
BstMWI GCNNNNNNNGC 2 cut(s) 107, 278
BstNSI RCATGY 2 cut(s) 398, 690
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 3 cut(s) 399, 829, 887
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 87, 139, 901
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 2 cut(s) 101, 383
BtgI CCRYGG 1 cut(s) 727
BtgZI GCGATG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 396, 688
CaiI CAGNNNCTG 2 cut(s) 133, 197
CciI TCATGA 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 4 cut(s) 146, 351, 431, 669
CviAII CATG 7 cut(s) 158, 185, 221, 254, 395, 680, 687
CviJI RGCY 9 cut(s) 78, 101, 177, 246, 309, 383, 818, 834, 902
CviKI_1 RGCY 9 cut(s) 78, 101, 177, 246, 309, 383, 818, 834, 902
CviQI GTAC 4 cut(s) 146, 351, 431, 669
DdeI CTNAG 2 cut(s) 642, 665
DpnI GATC 2 cut(s) 232, 660
DpnII GATC 2 cut(s) 230, 658
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 677
EcoT14I CCWWGG 1 cut(s) 445
EcoT22I ATGCAT 2 cut(s) 681, 766
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 7 cut(s) 161, 188, 224, 257, 398, 683, 690
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 7 cut(s) 157, 184, 220, 253, 394, 679, 686
Fnu4HI GCNGC 4 cut(s) 5, 76, 128, 890
Fsp4HI GCNGC 4 cut(s) 5, 76, 128, 890
FspBI CTAG 1 cut(s) 264
GluI GCNGC 4 cut(s) 5, 76, 128, 890
HaeIII GGCC 2 cut(s) 101, 383
HapII CCGG 1 cut(s) 119
Hin1II CATG 7 cut(s) 161, 188, 224, 257, 398, 683, 690
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HinfI GANTC 2 cut(s) 87, 600
HpaI GTTAAC 1 cut(s) 720
HpaII CCGG 1 cut(s) 119
HphI GGTGA 3 cut(s) 56, 133, 173
Hpy166II GTNNAC 4 cut(s) 431, 720, 727, 868
Hpy188I TCNGA 2 cut(s) 615, 696
Hpy188III TCNNGA 3 cut(s) 91, 254, 589
Hpy8I GTNNAC 4 cut(s) 431, 720, 727, 868
HpyAV CCTTC 6 cut(s) 293, 322, 341, 586, 590, 701
HpyCH4III ACNGT 3 cut(s) 455, 511, 724
HpyCH4V TGCA 7 cut(s) 272, 394, 440, 580, 679, 764, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 278
HpyF3I CTNAG 2 cut(s) 642, 665
Hsp92II CATG 7 cut(s) 161, 188, 224, 257, 398, 683, 690
KpnI GGTACC 1 cut(s) 354
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 2 cut(s) 230, 658
LmnI GCTCC 3 cut(s) 314, 480, 683
LpnPI CCDG 9 cut(s) 70, 116, 132, 177, 183, 315, 402, 510, 878
Lsp1109I GCAGC 3 cut(s) 87, 139, 901
LweI GCATC 2 cut(s) 751, 863
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 637
MalI GATC 2 cut(s) 232, 660
MboI GATC 2 cut(s) 230, 658
MboII GAAGA 3 cut(s) 53, 553, 770
MhlI GDGCHC 2 cut(s) 453, 477
MluCI AATT 3 cut(s) 13, 303, 797
MmeI TCCRAC 2 cut(s) 270, 430
MnlI CCTC 7 cut(s) 244, 373, 455, 539, 617, 637, 805
Mph1103I ATGCAT 2 cut(s) 681, 766
MseI TTAA 4 cut(s) 26, 36, 552, 719
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 107, 278
NciI CCSGG 1 cut(s) 119
NdeII GATC 2 cut(s) 230, 658
NlaIII CATG 7 cut(s) 161, 188, 224, 257, 398, 683, 690
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 637
NsiI ATGCAT 2 cut(s) 681, 766
NspI RCATGY 2 cut(s) 398, 690
PaeI GCATGC 2 cut(s) 398, 690
PagI TCATGA 1 cut(s) 253
PfeI GAWTC 2 cut(s) 87, 600
PkrI GCNGC 4 cut(s) 6, 77, 129, 891
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 891
PstNI CAGNNNCTG 2 cut(s) 133, 197
RsaI GTAC 4 cut(s) 147, 352, 432, 670
RsaNI GTAC 4 cut(s) 146, 351, 431, 669
SaqAI TTAA 4 cut(s) 26, 36, 552, 719
SatI GCNGC 4 cut(s) 5, 76, 128, 890
Sau3AI GATC 2 cut(s) 230, 658
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 2 cut(s) 453, 477
SetI ASST 8 cut(s) 196, 243, 311, 352, 356, 466, 790, 836
SfaNI GCATC 2 cut(s) 751, 863
SfcI CTRYAG 3 cut(s) 399, 829, 887
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SphI GCATGC 2 cut(s) 398, 690
Sse9I AATT 3 cut(s) 13, 303, 797
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 3 cut(s) 455, 511, 724
TaqI TCGA 1 cut(s) 229
TasI AATT 3 cut(s) 13, 303, 797
TatI WGTACW 1 cut(s) 668
TfiI GAWTC 2 cut(s) 87, 600
Tru1I TTAA 4 cut(s) 26, 36, 552, 719
Tru9I TTAA 4 cut(s) 26, 36, 552, 719
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 4 cut(s) 4, 75, 127, 889
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 5 cut(s) 312, 554, 592, 756, 862
TspGWI ACGGA 1 cut(s) 305
Vha464I CTTAAG 1 cut(s) 35
XapI RAATTY 1 cut(s) 13
XceI RCATGY 2 cut(s) 398, 690
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 2 cut(s) 681, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.