MD02G1081300.v1.1

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000515
Physical Location & Seq
Reverse (-)
6382442 .. 6383638
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1081300.v1.1.491

Sequence Viewer

Length: 165 bp
ATGGCAGAAGCTGCACAAAACTCAGCAGTTCCGCAACTCAAAATCGTTATACCCAACAAACATAGCGAAAAGCTTGTGGGCATATTACATGAAACTGGCTCTGCGGAGATTGTAATCTTATGCCATGGTTTTCGAGCCTCCAAGGTTGTTAGTTCCATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

55

Amino Acids

5.74

Weight (kDa)

7.98

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 163
AciI CCGC 2 cut(s) 32, 104
AluBI AGCT 2 cut(s) 11, 73
AluI AGCT 2 cut(s) 11, 73
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 11
BccI CCATC 1 cut(s) 164
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 124, 141
Bse1I ACTGG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 124, 141
BseJI GATNNNNATC 1 cut(s) 113
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 2 cut(s) 32, 104
BspCNI CTCAG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 124, 141
BssT1I CCWWGG 2 cut(s) 124, 141
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 11
CviAII CATG 2 cut(s) 89, 125
CviJI RGCY 4 cut(s) 11, 73, 99, 137
CviKI_1 RGCY 4 cut(s) 11, 73, 99, 137
DdeI CTNAG 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 124, 141
EcoT14I CCWWGG 2 cut(s) 124, 141
ErhI CCWWGG 2 cut(s) 124, 141
FaeI CATG 2 cut(s) 92, 128
FaiI YATR 7 cut(s) 50, 63, 83, 90, 121, 126, 163
FatI CATG 2 cut(s) 88, 124
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
Hin1II CATG 2 cut(s) 92, 128
HindIII AAGCTT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 22
Hsp92II CATG 2 cut(s) 92, 128
LpnPI CCDG 1 cut(s) 81
MnlI CCTC 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 124
NlaIII CATG 2 cut(s) 92, 128
PkrI GCNGC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 11
SatI GCNGC 1 cut(s) 12
SetI ASST 3 cut(s) 13, 75, 147
SgeI CNNG 6 cut(s) 86, 101, 108, 137, 146, 154
SsiI CCGC 2 cut(s) 32, 104
StyI CCWWGG 2 cut(s) 124, 141
TaqI TCGA 1 cut(s) 133
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.