FvH4_1g07680

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000515
Physical Location & Seq
Reverse (-)
4080167 .. 4080871
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07680.t1

Sequence Viewer

Length: 231 bp
ATGGCAGAGGCTGCACAGATGCTAGTGAGCCAGAAGCAGAAAGTCCTTGTGACCAACAAACATGGTGAAAAGCTGGTCGGCTTATTACATGAGAACGGTTCAAGAGAGATTGTGATATTGTGCCATGGAGCTAGAGCCTCAAAGGACCATTTTATTATTGAGAACCTTGCTGTTGCGTTGGAAAAGGAAGGAATTAGTTCCTTCCGTTTTGATTTTTCTGGAAATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

77

Amino Acids

8.32

Weight (kDa)

6.9

Isoelectric Point (pI)

21.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 102
AluBI AGCT 2 cut(s) 73, 131
AluI AGCT 2 cut(s) 73, 131
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 145
BfaI CTAG 2 cut(s) 23, 132
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmsI GCATC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 124
Bsp19I CCATGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 3 cut(s) 62, 89, 125
CviJI RGCY 6 cut(s) 11, 30, 73, 81, 131, 137
CviKI_1 RGCY 6 cut(s) 11, 30, 73, 81, 131, 137
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 3 cut(s) 65, 92, 128
FaiI YATR 3 cut(s) 63, 90, 126
FatI CATG 3 cut(s) 61, 88, 124
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 23, 132
GluI GCNGC 1 cut(s) 12
Hin1II CATG 3 cut(s) 65, 92, 128
HphI GGTGA 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 102, 219
HpyAV CCTTC 2 cut(s) 182, 211
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 65, 92, 128
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 3 cut(s) 44, 59, 204
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 23, 132
MaeIII GTNAC 1 cut(s) 49
MluCI AATT 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 124
NlaIII CATG 3 cut(s) 65, 92, 128
NmuCI GTSAC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 11
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 145
SetI ASST 3 cut(s) 75, 133, 168
SfaNI GCATC 1 cut(s) 9
SinI GGWCC 1 cut(s) 145
Sse9I AATT 1 cut(s) 192
SspMI CTAG 2 cut(s) 23, 132
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 98
TasI AATT 1 cut(s) 192
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 2 cut(s) 23, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.