RLG00000016414

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000515
Physical Location & Seq
Reverse (-)
6453117 .. 6455308
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016414

Sequence Viewer

Length: 909 bp
ATGTACGACTTAATTAACGATCGAATGAAAACTTACTTAATTAAGATATGCTGTGAAGATCGAGAAGCAGAGACTGTGCAAAACGAATCTTGGAATAACATGGCAGAGGCTGCACAGATGCTAATTAGCCAGAAGCTGAAAATAATTGTAACCAACAATCATGGTGAAAAGCTTGTCGGCTTATTACATGAAACCGGTTCAAGGGAGATTGTGATCTTGTGCCATCCAGCCCGAACCTCCAAGGACCACTTTATTATAGCGAACCTTGCTGTTGCATTGGAAAAGGAAGGAATTAGTTCCTTCCGTTTTGATTTCGCTGGAAATGGAGAAAGTGAAGGCGCCTTTCAGTTGAGTCACATGAGGAGAGAAGCTGATGACTTGCATGCTGTAATCCAACACTTCTCTGGATCAAACCATGTAGTTAGTGCGATTTTCGGGCACAGTAAAGGAGGCGTTGATGTGCTCCTGTATGCTTCGAAGTATCATGACATTCCTACGGTTGTCGAAGCTTCTGCACGCTATGACCTAAAGAAAGGCATTGAAAGACACCTGGGGAAAGACTTGGGGAAAGACTTTATGGAGAAGATCAAAAAGGAAGGATTCATTGATATTGGAAGTCCTAAATTTCGGGTGACTGAGGAAAGCTTGATGGACATCCTAAGCACTGATATGCGTGAATCGTGCCTCAAGATTGACAAAGATTGCCGGGTGCTAATAGTCCATGGATCTGCTGATGAGATCACTCCGGTTGAAGATGCATTTGAGTTTGCCAAGTTCATACCTAACCACAAATTACATATTATAGAAGGAGCTGATCATTGTTACAAATCGCATCAAGCCGAGTTAGACACAGTTGTTGTGGACTTCATAAAAGCAGCTCTGCAGCAGGACAAGGCTTCTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

303

Amino Acids

33.9

Weight (kDa)

5.72

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 68 - 225 5e-11 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AclWI GGATC 2 cut(s) 415, 733
AcsI RAATTY 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 201
AgeI ACCGGT 1 cut(s) 194
AgsI TTSAA 3 cut(s) 201, 542, 752
AjnI CCWGG 1 cut(s) 549
AluBI AGCT 7 cut(s) 136, 172, 371, 509, 645, 812, 878
AluI AGCT 7 cut(s) 136, 172, 371, 509, 645, 812, 878
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 415, 733
AlwNI CAGNNNCTG 3 cut(s) 74, 110, 136
ApeKI GCWGC 3 cut(s) 110, 875, 883
ApoI RAATTY 1 cut(s) 623
AsiGI ACCGGT 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 295
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 707
AsuHPI GGTGA 2 cut(s) 176, 643
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 97, 887, 895
BccI CCATC 2 cut(s) 231, 643
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 1 cut(s) 551
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 1 cut(s) 707
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 907
BfmI CTRYAG 1 cut(s) 881
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 3 cut(s) 111, 876, 884
BlsI GCNGC 3 cut(s) 112, 877, 885
Bme1390I CCNGG 2 cut(s) 551, 707
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 2 cut(s) 551, 707
BmsI GCATC 3 cut(s) 108, 745, 841
Bpu10I CCTNAGC 1 cut(s) 659
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 707
BsaBI GATNNNNATC 2 cut(s) 212, 653
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 240, 550, 721
BsaWI WCCGGW 2 cut(s) 194, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 194
Bse8I GATNNNNATC 2 cut(s) 212, 653
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 3 cut(s) 240, 550, 721
BseGI GGATG 2 cut(s) 223, 654
BseJI GATNNNNATC 2 cut(s) 212, 653
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 627
BseRI GAGGAG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 3 cut(s) 97, 887, 895
BsgI GTGCAG 2 cut(s) 96, 498
Bsh1285I CGRYCG 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 338
BshTI ACCGGT 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 3 cut(s) 195, 706, 746
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 441, 465
Bsp143I GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
Bsp19I CCATGG 1 cut(s) 721
BspCNI CTCAG 1 cut(s) 628
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 885
BspPI GGATC 2 cut(s) 415, 733
BspT104I TTCGAA 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 240, 550, 721
BssMI GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 240, 721
Bst2UI CCWGG 1 cut(s) 551
Bst4CI ACNGT 4 cut(s) 76, 443, 499, 853
BstACI GRCGYC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 384, 517
BstDEI CTNAG 2 cut(s) 636, 659
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 2 cut(s) 223, 654
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 8 cut(s) 22, 61, 216, 410, 588, 728, 741, 817
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 110, 266
BstNI CCWGG 1 cut(s) 551
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 549, 705
BstSFI CTRYAG 1 cut(s) 881
BstSLI GKGCMC 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 97, 887, 895
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
BtgI CCRYGG 1 cut(s) 721
BtsCI GGATG 2 cut(s) 223, 654
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 2 cut(s) 384, 517
CaiI CAGNNNCTG 3 cut(s) 74, 110, 136
CciI TCATGA 1 cut(s) 484
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 194
CviAII CATG 8 cut(s) 100, 161, 188, 358, 383, 416, 485, 722
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 636, 659
DinI GGCGCC 1 cut(s) 340
DpnI GATC 8 cut(s) 21, 60, 215, 409, 587, 727, 740, 816
DpnII GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
Eco130I CCWWGG 2 cut(s) 240, 721
Eco47I GGWCC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 549
EcoT14I CCWWGG 2 cut(s) 240, 721
EcoT22I ATGCAT 1 cut(s) 760
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 2 cut(s) 240, 721
FaeI CATG 8 cut(s) 103, 164, 191, 361, 386, 419, 488, 725
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 8 cut(s) 99, 160, 187, 357, 382, 415, 484, 721
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 111, 876, 884
FokI GGATG 2 cut(s) 210, 641
Fsp4HI GCNGC 3 cut(s) 111, 876, 884
FspBI CTAG 1 cut(s) 907
GlaI GCGC 1 cut(s) 340
GluI GCNGC 3 cut(s) 111, 876, 884
HaeII RGCGCY 1 cut(s) 342
HapII CCGG 3 cut(s) 195, 706, 746
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 8 cut(s) 103, 164, 191, 361, 386, 419, 488, 725
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HindIII AAGCTT 3 cut(s) 170, 507, 643
HinfI GANTC 4 cut(s) 86, 352, 600, 677
HpaII CCGG 3 cut(s) 195, 706, 746
HphI GGTGA 2 cut(s) 176, 643
Hpy166II GTNNAC 1 cut(s) 862
Hpy188III TCNNGA 4 cut(s) 62, 405, 485, 688
Hpy8I GTNNAC 1 cut(s) 862
HpyAV CCTTC 5 cut(s) 281, 310, 329, 590, 800
HpyCH4III ACNGT 4 cut(s) 76, 443, 499, 853
HpyCH4V TGCA 7 cut(s) 79, 113, 275, 382, 515, 758, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 266
HpyF3I CTNAG 2 cut(s) 636, 659
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 8 cut(s) 103, 164, 191, 361, 386, 419, 488, 725
HspAI GCGC 1 cut(s) 339
KasI GGCGCC 1 cut(s) 338
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
LmnI GCTCC 2 cut(s) 468, 809
Lsp1109I GCAGC 3 cut(s) 97, 887, 895
LweI GCATC 3 cut(s) 108, 745, 841
MaeI CTAG 1 cut(s) 907
MaeIII GTNAC 4 cut(s) 148, 353, 631, 821
MalI GATC 8 cut(s) 21, 60, 215, 409, 587, 727, 740, 816
MboI GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
MboII GAAGA 4 cut(s) 68, 595, 764, 891
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 2 cut(s) 441, 465
MluCI AATT 7 cut(s) 12, 39, 123, 144, 291, 623, 791
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 6 cut(s) 100, 247, 354, 443, 631, 695
Mph1103I ATGCAT 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 295
MseI TTAA 4 cut(s) 11, 15, 38, 42
MslI CAYNNNNRTG 1 cut(s) 668
MspI CCGG 3 cut(s) 195, 706, 746
MspR9I CCNGG 2 cut(s) 551, 707
MvaI CCWGG 1 cut(s) 551
MwoI GCNNNNNNNGC 2 cut(s) 110, 266
NarI GGCGCC 1 cut(s) 339
NciI CCSGG 1 cut(s) 707
NcoI CCATGG 1 cut(s) 721
NdeII GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
NlaIII CATG 8 cut(s) 103, 164, 191, 361, 386, 419, 488, 725
NlaIV GGNNCC 1 cut(s) 340
NmeAIII GCCGAG 1 cut(s) 865
NmuCI GTSAC 2 cut(s) 353, 631
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 1 cut(s) 476
PacI TTAATTAA 2 cut(s) 15, 42
PaeI GCATGC 1 cut(s) 386
PagI TCATGA 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 295
PfeI GAWTC 3 cut(s) 86, 600, 677
PinAI ACCGGT 1 cut(s) 194
PkrI GCNGC 3 cut(s) 112, 877, 885
Ple19I CGATCG 1 cut(s) 22
PleI GAGTC 1 cut(s) 360
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 549
PspGI CCWGG 1 cut(s) 549
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 885
PstNI CAGNNNCTG 3 cut(s) 74, 110, 136
PsuI RGATCY 1 cut(s) 725
PvuI CGATCG 1 cut(s) 22
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 668
SaqAI TTAA 4 cut(s) 11, 15, 38, 42
SatI GCNGC 3 cut(s) 111, 876, 884
Sau3AI GATC 8 cut(s) 19, 58, 213, 407, 585, 725, 738, 814
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 551, 707
SduI GDGCHC 2 cut(s) 441, 465
SfaNI GCATC 3 cut(s) 108, 745, 841
SfcI CTRYAG 1 cut(s) 881
SfoI GGCGCC 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SphI GCATGC 1 cut(s) 386
Sse9I AATT 7 cut(s) 12, 39, 123, 144, 291, 623, 791
SspDI GGCGCC 1 cut(s) 338
SspMI CTAG 1 cut(s) 907
StyD4I CCNGG 2 cut(s) 549, 705
StyI CCWWGG 2 cut(s) 240, 721
TaaI ACNGT 4 cut(s) 76, 443, 499, 853
TaqI TCGA 4 cut(s) 22, 61, 476, 504
TasI AATT 7 cut(s) 12, 39, 123, 144, 291, 623, 791
TfiI GAWTC 3 cut(s) 86, 600, 677
Tru1I TTAA 4 cut(s) 11, 15, 38, 42
Tru9I TTAA 4 cut(s) 11, 15, 38, 42
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 2 cut(s) 353, 631
TseI GCWGC 3 cut(s) 110, 875, 883
Tsp45I GTSAC 2 cut(s) 353, 631
TspDTI ATGAA 5 cut(s) 41, 204, 592, 766, 856
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 623
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 295
XspI CTAG 1 cut(s) 907
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.