Rmu_sc0006964.1_g000003

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006964.1
OG0000515
Physical Location & Seq
Reverse (-)
18032 .. 20394
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006964.1_g000003.1.cds

Sequence Viewer

Length: 801 bp
atggcccagactgcccaaaacccggtgaagcagcaattgaaaatcgttgtacccaacaaacatggtgaaaaacttgtgggcttattacatgacacaggttctggggagattgtaatcttatgtcatggttttcgatcctcaaaggagacaactagtattgcaaacattgctgttgcgttggagaatgaaggaattagctccttccgttttgactttgctggaaatggggaaagtgaaggtacctttcagtatggtcattatcgtaaagaggctgatgacttgcatgctgtagtccaacacttctctggggcaaatcgtgtaccaagtgcaatccttgggcacagtaaaggaggtaatgttgtgctcctatatgcttccaagtatcatgacattcccaccgttgtcaatgtttctgggcgttatgatatgaaaagaggcattaaagaacgcttgggagaagactttatgcaaagaatcaagacggaaggatttattgatgttcagaataagagaggaagttatcgagtgacagaggaaagtttgatggatcgcctaagtacagatatgcatgaagcatgccttcagattgacaaagattgtcgcgtattaactgtccatgggtctgctgatgaaatcatcgctgttgaagacgcattagagtttgccaagattatacctaaccacaaactacatatcatagagggagctaaccataactacagctcacatcaagccgagttggcgtcagttgttgtggacttcataaagacatctctggagcaggacaaggctacttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

266

Amino Acids

29.4

Weight (kDa)

6.05

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AccII CGCG 1 cut(s) 603
AclWI GGATC 2 cut(s) 129, 555
AcuI CTGAAG 1 cut(s) 566
AcyI GRCGYC 1 cut(s) 743
AfaI GTAC 4 cut(s) 51, 241, 321, 559
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 2 cut(s) 40, 647
AhlI ACTAGT 1 cut(s) 152
AluBI AGCT 3 cut(s) 198, 707, 723
AluI AGCT 3 cut(s) 198, 707, 723
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 129, 555
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 31
Asp718I GGTACC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 37, 77
BaeGI GKGCMC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 239
BbsI GAAGAC 2 cut(s) 465, 654
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 538
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 140
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 2 cut(s) 288, 718
BglI GCCNNNNNGGC 1 cut(s) 740
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 465, 654
BpmI CTGGAG 1 cut(s) 797
BpuMI CCSGG 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 743
BsaJI CCNNGG 2 cut(s) 334, 616
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 334, 616
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 603
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 342, 366
Bsp143I GATC 2 cut(s) 134, 547
Bsp19I CCATGG 1 cut(s) 616
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 603
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 129, 555
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 334, 616
BssMI GATC 2 cut(s) 134, 547
BssNI GRCGYC 1 cut(s) 743
BssT1I CCWWGG 2 cut(s) 334, 616
Bst4CI ACNGT 3 cut(s) 344, 400, 613
BstACI GRCGYC 1 cut(s) 743
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 285, 577
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 616
BstFNI CGCG 1 cut(s) 603
BstKTI GATC 2 cut(s) 137, 550
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 134, 547
BstMWI GCNNNNNNNGC 3 cut(s) 11, 167, 740
BstNSI RCATGY 2 cut(s) 287, 579
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 288, 718
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 603
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 465, 654
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 285, 577
CaiI CAGNNNCTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 2 cut(s) 659, 732
Csp6I GTAC 4 cut(s) 50, 240, 320, 558
CviAII CATG 8 cut(s) 62, 89, 125, 284, 386, 569, 576, 617
CviJI RGCY 8 cut(s) 5, 81, 198, 272, 707, 723, 734, 791
CviKI_1 RGCY 8 cut(s) 5, 81, 198, 272, 707, 723, 734, 791
CviQI GTAC 4 cut(s) 50, 240, 320, 558
DdeI CTNAG 1 cut(s) 554
DpnI GATC 2 cut(s) 136, 549
DpnII GATC 2 cut(s) 134, 547
Eco130I CCWWGG 2 cut(s) 334, 616
Eco57I CTGAAG 1 cut(s) 566
EcoT14I CCWWGG 2 cut(s) 334, 616
EcoT22I ATGCAT 1 cut(s) 570
ErhI CCWWGG 2 cut(s) 334, 616
FaeI CATG 8 cut(s) 65, 92, 128, 287, 389, 572, 579, 620
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FatI CATG 8 cut(s) 61, 88, 124, 283, 385, 568, 575, 616
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 797
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 23
HgaI GACGC 2 cut(s) 659, 732
Hin1I GRCGYC 1 cut(s) 743
Hin1II CATG 8 cut(s) 65, 92, 128, 287, 389, 572, 579, 620
HinfI GANTC 1 cut(s) 474
HpaII CCGG 1 cut(s) 23
HphI GGTGA 2 cut(s) 37, 77
Hpy166II GTNNAC 2 cut(s) 320, 757
Hpy188I TCNGA 2 cut(s) 504, 585
Hpy188III TCNNGA 3 cut(s) 386, 478, 776
Hpy8I GTNNAC 2 cut(s) 320, 757
HpyAV CCTTC 5 cut(s) 182, 211, 230, 479, 590
HpyCH4III ACNGT 3 cut(s) 344, 400, 613
HpyCH4V TGCA 5 cut(s) 161, 283, 329, 469, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 167, 740
HpyF3I CTNAG 1 cut(s) 554
Hsp92I GRCGYC 1 cut(s) 743
Hsp92II CATG 8 cut(s) 65, 92, 128, 287, 389, 572, 579, 620
KpnI GGTACC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 134, 547
LmnI GCTCC 4 cut(s) 203, 369, 704, 778
LpnPI CCDG 9 cut(s) 20, 36, 81, 87, 204, 291, 399, 761, 767
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 526
MalI GATC 2 cut(s) 136, 549
MboI GATC 2 cut(s) 134, 547
MboII GAAGA 2 cut(s) 470, 659
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 342, 366
MluCI AATT 2 cut(s) 35, 192
MmeI TCCRAC 2 cut(s) 159, 319
MnlI CCTC 7 cut(s) 148, 262, 344, 428, 506, 526, 694
Mph1103I ATGCAT 1 cut(s) 570
MseI TTAA 3 cut(s) 441, 608, 799
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 35
MvnI CGCG 1 cut(s) 603
MwoI GCNNNNNNNGC 3 cut(s) 11, 167, 740
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 616
NdeII GATC 2 cut(s) 134, 547
NlaIII CATG 8 cut(s) 65, 92, 128, 287, 389, 572, 579, 620
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 760
NmuCI GTSAC 1 cut(s) 526
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 287, 579
PaeI GCATGC 2 cut(s) 287, 579
PagI TCATGA 1 cut(s) 385
PfeI GAWTC 1 cut(s) 474
PkrI GCNGC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 4 cut(s) 51, 241, 321, 559
RsaNI GTAC 4 cut(s) 50, 240, 320, 558
SaqAI TTAA 3 cut(s) 441, 608, 799
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 134, 547
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 2 cut(s) 342, 366
SetI ASST 8 cut(s) 100, 200, 241, 245, 355, 679, 709, 725
SfcI CTRYAG 2 cut(s) 288, 718
SpeI ACTAGT 1 cut(s) 152
SphI GCATGC 2 cut(s) 287, 579
Sse9I AATT 2 cut(s) 35, 192
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 2 cut(s) 334, 616
TaaI ACNGT 3 cut(s) 344, 400, 613
TaqI TCGA 2 cut(s) 133, 523
TasI AATT 2 cut(s) 35, 192
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 1 cut(s) 474
Tru1I TTAA 3 cut(s) 441, 608, 799
Tru9I TTAA 3 cut(s) 441, 608, 799
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 5 cut(s) 201, 443, 585, 645, 751
TspGWI ACGGA 2 cut(s) 194, 497
XceI RCATGY 2 cut(s) 287, 579
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.